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19 protocols using ab276131

1

Western Blot Analysis of Tight Junction Proteins

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The cells were lysed for 20 min in 180 μL of lysis buffer (Beyotime, Shanghai, China) on ice before the centrifugation at 4 °C and 14,000 rpm for 10 min. The total protein concentration was estimated using a bicinchoninic acid (BCA) protein detection kit (CWBIO, Shanghai, China) with bovine serum albumin (BSA) as the standard. The proteins were separated by sodium dodecyl sulfate poly-acrylamide gel electrophoresis (SDS-PAGE) and transferred onto a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA, USA). After being blocked with 5% (w/v) skimmed milk for 2 h, the membranes were probed with corresponding primary antibodies overnight at 4 °C and then incubated with secondary antibodies conjugated with horseradish peroxidase for 2 h. The primary antibodies used were: TLR4 (1:1000, Abcam, ab13556), myeloid differentiation factor 88 (MyD88, 1:1000, Abcam, ab133739), nuclear factor kappa-B (NF-κB) p65 (1:1000, Abcam, ab32536), NF-κB p65 (phospho S536) (1:1000, Abcam, ab76302), claudin-1 (1:2000, Abcam, ab211737), occludin (1:1000, Abcam, ab216327), ZO-1 (1:1000, Abcam, ab276131), myosin light-chain kinase (MLCK, 1:1000, ABclonal, A3835), and β-actin (1:5000, Abcam, ab179467). The protein intensity was quantified using the Image J software (version 1.8.0, NIH, Bethesda, MD, USA).
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2

Immunohistochemical Analysis of Colon Tissue

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Colon tissue sections (4 mm) were deparaffinized in xylene twice for 10 min, rehydrated in a graded ethanol series once for 5 min, incubated in sodium citrate buffer for 10 min for antigen retrieval, blocked with 10% bovine serum albumin for 1 h, and incubated with antibodies against Claudin-1 (1:100; Abcam, Cambridge, UK; ab242370), zonula occludens 1 (ZO-1) (1:100; Abcam; ab276131), Occludin (1:100; Abcam; ab216327), mucin 2 (MUC2) (1:500; Abcam; ab272692), myeloperoxidase (MPO) (1:500; Abcam; ab208670), CD11b (1:100; Abcam; ab133357), IL-17 (2 mg/mL; Abcam; ab79056), IL-10 (10 mg/mL; Abcam; ab189392) overnight, and IL-1β (1:500; Abcam: ab283818). The sections were then incubated with secondary antibodies (SP9000; Zsbio Biotechnology, Beijing, China) for 1 h. The images were acquired using a BX53F microscope (Olympus, Tokyo, Japan).
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3

Immunohistochemical Profiling of MUC2 and ZO1

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The tissue sections were dewaxed, the antigens were repaired with citric acid, and 3% hydrogen peroxide was added to block the endogenous peroxidase. Afterward, 10% goat serum was added to block the tissue sections for a 30-min period, followed by overnight incubation using a primary antibody against MUC2 (ab27692, Abcam, Cambridge, UK) and ZO1 (ab276131, Abcam, Cambridge, UK) at 4 °C, after which they were incubated using secondary antibody (K5007, DAKO, Copenhagen, Denmark) for 50 min at an ambient temperature. Color development was performed with 3,3′-diaminobenzidine (DAB), and then they were stained with hematoxylin, dehydrated, and sealed for microscopic examination.
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4

Immunohistochemical Analysis of Mouse Intestine

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Paraffin-embedded mouse intestinal tissue was cut into 3 μm slices. The sections were stained by immunohistochemistry, using an UltraSensitive™ SP (mouse/rabbit) IHC kit (Maxib, Fuzhou, China), according to the manufacturer's instructions. AB-PAS was performed using an AB-PAS staining kit (Solarbio.G1285, Solarbio) according to the manufacturer's instructions. For IHC,primary antibodies against the following targets were used: ZO-1 (#ab276131, abcam), MUC-2 (#ab272692, abcam), P2RY13 (#APR-017, Alomone labs), STAT3 (#124H6, CST).
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5

Western Blot Analysis of Epithelial-Mesenchymal Markers

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After being separated by SDS-PAGE (P1200, Solarbio, China), total proteins were transferred onto PVDF membranes (Millipore, Billerica, MA, USA). Afterwards, membranes were incubated by primary antibodies at 4 °C overnight. Then the blots were then incubated with secondary antibody for 1 h at dark room after washed with PBS for three times. The primary antibodies were as follows: ZO-1 (ab276131, Abcam), E-cadherin (ab40772, Abcam), N-cadherin (ab76011, Abcam), Vimentin (ab92547, Abcam), Fibronectin, NAP1L2 (K21628-RNX, Biolab), HNRNPC, METTL14 (ab220030, Abcam), YY1 (ab109237, Abcam), MMP2 (ab92536, Abcam), MMP9 (ab76003, Abcam) and β-actin (ab8226, Abcam). Protein quantification was conducted by Immobilon Western Chemiluminescent HRP Substrate (Merck Millipore, Billerican MA, USA). The assay was independently carried out in triplicate.
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6

Western Blot Analysis of Protein Expression

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Proteins were isolated using RIPA lysate buffer. Protein concentrations were determined by the BCA protein assay kit (Beyotime, Shanghai, China). Protein samples were separated by SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Billerica, MA, USA). After blocking with 5% BSA for 1 h at room temperature, the membranes were incubated with primary antibodies overnight at 4 °C and then incubated with the secondary antibodies for 1 h at room temperature. Finally, the immunoblot was visualized by a gel densitometric scanning system and quantified using ImageJ (National Institutes of Mental Health, Bethesda, MD, USA).
The primary antibodies were as follows: SIRT6 (#ab191385; abcam; 1:1000), H3K9Ac (#ab32129; abcam; 1:1000), ERK1/2 (#4695S; CST; 1:1000), p-EKR1/2 (#9101S; CST; 1:1000), acetylated-lysine antibody (#9441S; CST; 1:1000), ZO-1 (#61-7300; Invitrogen; 1:500 and #ab276131; abcam; 1:1000), occludin (#ab216327; abcam; 1:1000), GAPDH (#A19056; Abclonal; 1:2000), LC3B (#ab51520; abcam; 1:1000), Beclin1 (#A21191; Abclonal; 1:1000), and α-tubulin (#AF0001; Beyotime; 1:1000).
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7

Protein Expression Profiling in NSCLC

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Total proteins were subjected to extraction from NSCLC cells by total protein extraction kit. Next, the total proteins were subjected to the treatment with SDS/PAGE gel for separation, followed by being transferred onto the polyvinylidene fluoride (PVDF) membranes. Subsequently, the membranes were subjected to blocking via 5% skim milk, and incubated with the primary antibodies overnight at 4 °C. Next, the membranes were subjected to incubation with the secondary antibodies (ab150077, Abcam, UK). The primary antibodies used contain Anti-E-cadherin (ab40772, Abcam, UK), Anti-Vimentin (ab92547, Abcam, UK), Anti-N-cadherin (ab76011, Abcam, UK), Anti-ZO-1 (ab276131, Abcam, UK), Anti-β-actin (ab8226, Abcam, UK), Anti-Histone H3, Anti-β-catenin (ab32572, Abcam, UK), Anti-c-jun, Anti-c-myc, Anti-GSK-3β, Anti-Axin, Anti-APC and Anti-CK1. Histone H3 and β-actin served as the internal reference. Bio-repeats were implemented in triplicate.
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8

Evaluating Epithelial-Mesenchymal Transition Markers

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Total proteins were isolated from HOS and 143B cells, followed by separation on SDS-PAGE. The protein samples were then transferred onto PVDF membranes. After being blocked by skim milk, the membranes were incubated with primary antibodies and secondary antibodies (ab150077, Abcam, UK). After the washing in TBST, the blots were visualized and recorded. The antibodies used in western blot include Anti-ZO-1 (ab276131, Abcam), Anti-E-cadherin (ab40772, Abcam), Anti-N-cadherin (ab76011, Abcam), Anti-Vimentin (ab92547, Abcam), Anti-β-actin (ab8226, Abcam), Anti-AKT (ab179463, Abcam), Anti-p-AKT (ab8805, Abcam), Anti-mTOR (ab2732, Abcam), Anti-p-mTOR (ab109268, Abcam), Anti-PDPK1 (ab245451, Abcam. β-actin was used as internal control. Each experiment was repeated in triplicate.
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9

Protein Expression at Cell Junctions

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Protein expression of the inter-endothelial junctions (Claudin-5, Occludin, VE-cadherin, ZO-1), GSK3ß and ß-catenin in hCMEC/D3 cells was assessed by western-blot following standard procedures and as previously described [32 (link), 37 (link), 38 (link)]. Cells were lysed on ice with RIPA lysis buffer 1X that contains a cocktail of inhibitors (1 mM PMSF, 1 mM sodium orthovanadate, 1 μg/ml leupeptin, and a protease inhibitor cocktail (cat# P2714, Sigma). Nuclear and membrane proteins were extracted using the NE-PERTM Extraction Reagent ((cat# 78833, Thermofischer) and the Mem-PERTM Plus Membrane Protein Extraction Kit (cat# 89842) respectively and following the manufacturer’s protocol. The following primary antibodies from Abcam were used: Anti-Claudin-5 (ab15106) 1/500, Anti-Occludin (ab216327) 1/1000, VE-cadherin (ab33168) 1/1000, ZO-1 (ab276131) 1/750, Anti-GK3ß ab32391 (1/3500), and Anti-ß-catenin (ab32572) 1/3500. Anti-GAPDH (ab9485) 1/7500 was used as loading and transfer control.
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10

Quantifying Tight Junction Proteins

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Total protein was extracted from colon tissues using RIPA lysis buffer and quantified using the BCA method. Then, equal amounts of protein per sample were separated using 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes. After blocking with 5% fat-free milk in Tris-buffered saline + Tween 20 (TBST), the membranes were incubated overnight with primary antibodies targeting ZO-1 (1:1000, Cat #ab276131; Abcam), Occludin (1:2000, Cat #ab216327; Abcam), and GAPDH (1:5000, Cat #ab8245; Abcam) at 4 °C. The following day, the membranes were incubated with secondary antibodies and developed using Chemistar High-sig ECL Western Blotting Substrate. The density of the bands was quantified using Image-Pro Plus 6.0 software.
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