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82 protocols using taxifolin

1

Crystallization of CHI and CHI_H33A

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The protein expression, purification, and crystallization of CHI have been previously described in detail, including the cloning of the variant His33Ala [18 (link)].
In brief, crystallisation was performed with 6.8 mg/mL protein in 50 mM sodium phosphate buffer at pH 6.8. Crystals were obtained by the hanging-drop method using equal volumes of protein and reservoir solutions (2 μL) at 293 K. The reservoir solution consisted of ammonium sulphate, 0.2 M NaCl, and 0.1 M HEPES pH 7.5. The ammonium sulphate concentrations for native CHI and CHI_H33A were 1.8 M and 1.5 M, respectively. The crystals were soaked for 10 min in the reservoir solution with 2.5 mM (+)-taxifolin (2.5% ethanol) (2R,3R)-dihydroquercetin, (+)-taxifolin, Sigma-Aldrich, 78666, and HWI Analytik, 0389-05-85). The crystals were flash frozen in liquid nitrogen and stored until data collection. For all crystals, a cryoprotectant solution consisting of 22% glycerol, 1.8 M ammonium sulphate, 0.2 M NaCl, and 0.1 M HEPES pH 7.5 was used.
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2

Antioxidant Potential of Urushiol Compounds

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Urushiol standards (C15:3, C15:2, C15:1) were purchased from Phytolab GmbH and Co. (Dutendorfer Straße, Vestenbergsgreuth, Germany). Fustin, fisetin, sulfuretin, and butein were purchased from Chromadex Co. (Irvine, CA, USA). Gallic acid, methyl gallate, quercetin, taxifolin, PGG, Folin-Ciocalteu reagent, 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azino -bis(3-ethylbenzothiazoline-6-sulfonic acid), diammonium salt (ABTS), 6-hydroxy-2,5,7,8 -tetramethylchromane-2-carboxylic acid (Trolox), 2,4,6-tri(2-pyridyl)-s-triazine (TPTZ), potassium persulfate, tannic acid, bovine serum albumin (BSA), and sodium dodecyl sulfate (SDS) were purchased from Sigma-Aldrich (St. Louis, MO, USA). HPLC grade methanol, acetonitrile, and deionized water were purchased from J.T. Baker Co. (Phillipsburg, NJ, USA). All of the other reagents were of analytical grade.
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3

Screening Anti-Viral Compounds Using Cell Lines

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Zinc picolinate, Copper sulfate ≥ 99%, Epigallocatechin gallate (EGCG) ≥ 95%, Taxifolin ≥ 85%, Naringenin ≥ 95%, MTT reagent thiazolyl blue tetrazolium bromide (Sigma-Aldrich, Rehovot, Israel), Quercetin 95% (Angene, London, UK), Hydroxychloroquine sulfate 98% (Acros organics, Waltham, MA, USA), RNA purification Kit, EZ RNA, (Biological Industries, Beit HaEmek, Israel), cDNA kit, qScript Flex, (Quanta bio, Beverly, MA, USA), Fast SYBR Green Master Mix (Applied Biosystems, Waltham, MA, USA), Zinc quantification kit, and Fluorometric (Abcam, Cambridge, UK).
The cell lines used in this study were A549 (ATCC® CCL-185™), NCI-H1299 (ATCC® CRL-5803™), Vero (ATCC® CCL-81™), and SH-SY5Y (ATCC® CRL-2266™).
Influenza A virus (IAV) strain A/Puerto Rico/8/34 H1N1 (PR8) that harbors two copies of the mNeonGreen fluorescence marker, fused to the PB2 and PA polymerase ORFs, via a porcine teschovirus-1 2A peptide sequence, the human coronavirus OC43 (HCoV-OC43; a betacoronavirus) that was generously donated by Kobiler laboratory at Tel Aviv University, and human metapneumovirus expressing GFP (hMPV) [55 (link)].
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4

Taxifolin Treatment of Hepatocellular Carcinoma

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Human hepatocellular carcinoma cells HepG2 and HuH7 and kidney epithelial cells Vero were obtained from National Control Laboratory for Biologicals (National Institute of Health Islamabad). All cell lines were grown in DMEM (Gibco by Life Technologies) supplemented with 10% Fetal Bovine serum (FBS) (Gibco by Life Technologies) and 1% penicillin-streptomycin with 5% CO2 at 37 °C. Taxifolin (Sigma Aldrich) dissolved in Dimethyl sulfoxide (0.1% (v/v)) was employed for the treatment of HepG2 and Huh7 cells at a confluency of ∼70%. Cells were treated with Taxifolin at 0.1 µM, 0.125 µM, 0.15 µM, 0.20 µM and 0.22 µM for 24 h.
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5

Lipid Bilayer Characterization with Phytochemicals

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CaCl2, NaCl, NaOH, calcein, Triton X-100, Sephadex G-50, 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid (HEPES), dimethylsulfoxide (DMSO), and plant polyphenols: chalcones (4′-hydroxychalcone (≥99%, high-performance liquid chromatography (HPLC)), cardamonin (≥98%, HPLC), isoliquiritigenin (≥98%, HPLC)), dihydrochalcones (phloretin (≥99%, HPLC)), stilbenes (resveratrol (≥99%, HPLC), piceatannol (≥98%, HPLC)), isoflavones (daidzein (≥98%, HPLC), biochanin A (≥95%, HPLC), genistein (≥98%, HPLC), genistin (≥95%, HPLC)), flavanones (liquiritigenin (≥97%, HPLC), naringenin (≥95%, HPLC)), flavan-3-ols (catechin (≥98%, HPLC)), flavononols (taxifolin (≥90%, HPLC)), flavonols (quercetin, myricetin, and rutin), and lignans (honokiol (≥98%, HPLC)) were purchased from Sigma-Aldrich Company Ltd. (Gillingham, United Kingdom).
Lipids synthetic 1,2-dioleoyl-sn-glycero-3-phospho-(1-rac-glycerol) (DOPG), 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), 1,2-dipalmitoyl-sn-glycero-3-phospho-(1-rac-glycerol) (DPPG), 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), and cholesterol (CHOL) were obtained from Avanti Polar Lipids (Avanti Polar Lipids, Inc., Alabaster, AL, USA).
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6

Comprehensive Phytochemical Profiling

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Neochlorogenic acid, gallic acid, protocatechuic acid, chlorogenic acid, caffeic acid, p-hydroxybenzoic acid, 1,3-dicaffeoylquinic acid, p-coumaric acid, rutin, quercetin 3-β-galactoside, ferulic acid, taxifolin, 3,4-dicaffeoylquinic acid, trans-m-coumaric acid, quercetin 3-α-L-rhamnoside, 3,5-dicaffeoylquinic acid, 4,5-dicaffeoylquinic acid, rosmarinic acid, myrcetin, luteolin, quercetin, trans-cinnamic acid, apigenin, kaempferol, fenofibrate, dimethyl sulfoxide (DMSO), ethylenediaminetetraacetic acid (EDTA), hematoxylin, eosin, and trizma base were purchased from Sigma-Aldrich (St. Louis, MO, USA). Fetal bovine serum (FBS), Dulbecco’s modified Eagle’s medium (DMEM), streptomycin, and penicillin were purchased from Invitrogen (Carlsbad, CA, USA). Other reagents were commercially available and of special grade.
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7

Quantitative Analysis of Polyphenols

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Methanol (LC-MS grade) and sodium hydroxide (>99%) were purchased from Merck (Darmstadt, Germany). Ammonium acetate (≥99% for HPLC) and formic acid (LC-MS Ultra) were purchased from Fluka (Buchs, Switzerland). Isopropanol was obtained from Fisher Scientific (Geel, Belgium). Ultrapure water was provided by a Milli-Q purification apparatus (Millipore Direct-Q UV, Bedford, MA, USA). Regarding the standards that were used, syringic acid 95% was purchased from Extrasynthèse (Genay, France). Gallic acid 98%, ferulic acid 98%, epicatechin 97%, p-coumaric (4-hydroxycinnamic acid) 98%, homovanillic acid 97%, quercetin 98%, oleuropein 98%, pinoresinol 95%, caffeic acid 99%, taxifolin 98%, vanillic acid 97% and syringaldehyde 98% (internal standard) were obtained from Sigma-Aldrich (Steinheim, Germany). Hydroxytyrosol 98% and luteolin 98% were acquired from Santa Cruz Biotechnologies. Vanillin 99%, apigenin (4,5,7-trihydroxyflavone) 97% and tyrosol (2-(4-hydroxyphenyl) ethanol) 98% were purchased from Alfa Aesar (Karlsruhe, Germany). Stock standard solutions of individual compounds (1000 mg/L) were solubilized in methanol and stored at −20 °C in dark brown glass bottles. Intermediate standard working solutions containing the analytes were prepared by appropriate dilution of the stock solutions with methanol:water (80:20, v/v) over the concentration range 0.1–8 mg/L.
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8

Synthesis and Characterization of Valerolactone Conjugates

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Formic acid, dimethylformamide (DMF), acetonitrile, taxifolin, and ammonium acetate were purchased from Sigma‐Aldrich (Poole, UK). The (‒)‐epicatechin reference standard was purchased from Toronto Research Chemicals (Canada). The reference standards 5‐(3′,4′‐dihydroxyphenyl)‐γ‐valerolactone (3,4DHVL) and 5‐(3′‐methoxy‐4′‐hydroxyphenyl)‐γ‐valerolactone (4H3MVL) were synthesized in‐house as described by Chang et al.[15] The phase‐2 conjugates, specifically 5‐(3′‐hydroxyphenyl)‐γ‐valerolactone‐4’‐glucuronide (3HGV4‐glucuronide), 5‐(4′‐hydroxyphenyl)‐γ‐valerolactone‐3’‐glucuronide (4HVL3‐glucuronide), 5‐(3′‐hydroxyphenyl)‐γ‐valerolactone‐4’‐sulfate (3HGV4‐sulfate), and 5‐(4′‐hydroxyphenyl)‐γ‐valerolactone‐3’‐sulfate (3HGV4‐sulfate) were synthesized in‐house as described in the Supporting Information.
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9

Colorimetric Assay for Elastase Activity

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Dimethyl sulfoxide (DMSO), elastase from human leukocytes, N-succinyl-Ala-Ala-Ala-p-nitroanilide, collagenase from Clostridium histolyticum (Type I), collagen-fluorescein, oleanolic acid, hyaluronidase from bovine testes (Type I-S), hyaluronic acid sodium salt, 4-(dimethylamino)benzaldehyde (DMAB), 1,10-phenanthroline (1,10-Ph), taxifolin, quercetin and other chemicals were from Sigma-Aldrich (Prague, Czech Republic). Methanol (HiPerSolv CHROMANORM for HPLC, LC-MS grade) was from VWR International s.r.o. (Stříbrná Skalice, Czech Republic). All solutions were prepared using reverse-osmosis deionized water (Ultrapur, Watrex, Prague, Czech Republic). Nitrogen and helium (99.999% for all) were obtained from Linde Gas (Prague, Czech Republic).
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10

Comprehensive Wine Polyphenol Analysis

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All standards and reagents were LC-MS grade and were used without any further treatments. Authentic standards of 2,5-Dihydroxybenzoic acid (gentisic acid), 3,4-dihydroxybenzoic acid (protocatechuic acid), 4-hydroxybenzoic acid, cinnamic acid, epicatechin, eriodictyol, ferulic acid, gallic acid, myricetin, p-coumaric acid, pinoresinol, quercetin, resveratrol, rosmarinic acid, salicylic acid, syringic acid, taxifolin, and vanillic acid were purchased from Sigma-Aldrich (Stenheim, Germany). Apigenin, caffeic acid, catechin, ethyl vanillin (internal standard, IS), galangin, genistein, naringenin, tyrosol, and vanillin were acquired from Alfa Aesar (Karlsruche, Germany), whereas hydroxytyrosol and luteolin were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
2-Propanol (LC–MS grade) and methanol (MeOH) (LC–MS grade) were purchased from Fisher Scientific (Geel, Belgium) and Merck (Darmstadt, Germany), respectively. Formic acid 99%, ammonium acetate and sodium hydroxide monohydrate for trace analysis ≥ 99.9995% were all obtained from Fluka (Buchs, Switzerland). Ultrapure water (18.2 MΩ resistivity) was provided by a Millipore Direct-Q UV purification System (Millipore, Bedford, MA, USA). The wine samples were filtered using regenerated cellulose syringe filters (RC filters, pore size 0.2 μm, diameter 15 mm) purchased from Phenomenex (Torrance, CA, USA).
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