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Mastercycler ep realplex es

Manufactured by Eppendorf

The Mastercycler ep realplex ES is a real-time PCR system designed for quantitative analysis of DNA and RNA samples. It features a thermal block that accommodates a variety of sample formats, including 96-well, 384-well, and tube formats. The system is equipped with a high-performance optical system for sensitive detection of fluorescent signals, enabling precise quantification of target nucleic acids.

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6 protocols using mastercycler ep realplex es

1

Quantitative Analysis of MMP-11 Expression

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Relative quantification was performed to measure MMP-11 expression, using a real-time thermocycler (Eppendorf Mastercycler ep realplex ES). One microliter of cDNA and 0.2 μmol/L of each primers were mixed with SYBR Green RealMasterMix (Eppendorf). S9 and 18S were used as internal reference controls. Primers were designed for mouse MMP-11, S9 and 18S, using the Primer3web version 4.0[19 (link),20 (link)], according to sequences from the GeneBank database. Amplification conditions were: 2 min at 95 °C and three step-cycle of 95 °C for 15 s, 58 °C for 20 s and 68 °C for 20 s, for a total of 40 cycles.
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2

Quantifying IGFBP1 and INSR Expression

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For qRT-PCR, total cellular RNA was extracted from cells using the RNAqueous-4PCR kit and subjected to DNase treatment (Ambion). RNA levels were normalized against 18S ribosomal RNA in each sample, and cDNAs were synthesized from 2 μg of total RNA using the RETROscript first strand synthesis kit (Ambion). Primers were designed according to sequences from the GenBank database: human IGFBP1 (NM_000596.2): for 5′-CATTCCATCCTTTGGGAC-3′; rev 5′-ATTCTTGTTGCAGTTTGGCAG-3′. human INSR (NM_000208.2) for 5′-TTTGGGAAATCACCAGCTTGGCAGAAC-3′; rev. 5′-AAAGCTGGGGTGCAGGTC GTCCTTG-3′. A real-time thermocycler (Eppendorf Mastercycler ep realplex ES) was used to perform quantitative PCR. In a 20 μL final volume, 0.5 μL of the cDNA solution was mixed with SYBR Green RealMasterMix (Eppendorf), and 0.3 μM each of sense and antisense primers. The mixture was used as a template for the amplification by the following protocol: a denaturing step at 95°C for 2 min, then an amplification and quantification program repeated for 45 cycles of 95°C for 15 s, 55°C for 25 s, and 68°C for 25 s, followed by the melting curve step. SYBR Green fluorescence was measured, and relative quantification was made against ribosomal protein S9 cDNA used as an internal standard.
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3

Quantitative RT-PCR for Gene Expression

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Total cellular RNA was extracted with Trizol (Invitrogen) [19 (link)] and subjected to DNase treatment (Ambion). Amounts were normalized against ribosomal RNA in each sample. cDNAs were synthesized from 2 µg of total RNA using the RETROscript first strand synthesis kit (Ambion). A real-time thermocycler (Eppendorf Mastercycler ep realplex ES) was used to perform qRT-PCR. SYBR Green fluorescence was measured, and relative quantification was made against the RPS9 cDNA used as an internal standard. Gene-specific primers for qRT-PCR (rat InsI for GACCCGCAAGTGCCACAA, rev TCCACAAGCCACGCTTCTG; human OCN for TGACGAGTTGGCTGACCA, rev AGGGTGCCTGGAGAGGAG) were designed according to sequences from the GenBank database.
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4

Quantitative Analysis of Pancreatic Transcripts

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For qRT-PCR, total cellular RNA was extracted from INS-1 cells using the RNAqueous-4PCR kit and subjected to DNase treatment (Ambion). RNA levels were normalized against 18S ribosomal RNA in each sample, and cDNAs were synthesized from 2 μg of total RNA using the RETROscript first strand synthesis kit (Ambion). Primers for rat InsI, HMGA1, PDX-1, MafA, and Rps9 were designed according to sequences from the GenBank database (Table 2). A real-time thermocycler (Eppendorf Mastercycler ep realplex ES) was used to perform quantitative PCR. SYBR Green fluorescence was measured, and relative quantification was made against the Rps9 cDNA used as an internal standard (44 (link)). All PCR reactions were done in triplicate.
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5

Quantitative RT-PCR for Adipocyte Genes

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For quantitative RT-PCR (qRT-PCR), total cellular RNA was extracted from 3T3-L1 cells using the RNAqueous-4PCR kit (Ambion), subjected to DNase treatment, and cDNAs were synthesized from 1 μg of total RNA using the RETROscript first strand synthesis kit (Ambion). Primers for mouse HMGA1, Visfatin, VEGF, and Rps9 were designed according to sequences from the GenBank database. A real-time thermocycler (Eppendorf Mastercycler ep realplex ES) was used to perform qRT-PCR. SYBR Green fluorescence was measured, and relative quantification was made against the Rps9 cDNA used as an internal standard. All PCR reactions were carried out in triplicates.
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6

Quantifying Gene Expression in Adipocytes

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Total RNA was extracted from adipocytes and from visceral fat tissues, as previously described. [36] Reverse transcription was performed from 1 μg RNA (High-Capacity cDNA Reverse Transcription Kits, Applied Biosystems, Thermo Fisher Scientific, Bremen, Germany). Primers used were designed according to sequences from the Gene Bank Database and are described in Supporting Information A. Quantitative real-time PCR (q-RT PCR) was performed by a real-time thermocycler (Eppendorf Mastercycler ep realplex ES), as previously described. [37] SYBR Green fluorescence was measured (Real Master Mix Sybr Rox 5 prime, Eppendorf, Hamburg, Germany) and relative quantification was made using RPS9 to normalize the expression of the genes of interest. PCR reactions were repeated for three biological replicates.
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