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13 protocols using il 1β

1

Luciferase Reporter Assay for U251-MG Cells

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U251‐MG cells were seeded in 24‐well plates at a density of 1 × 105 cells/well. 24 h later, the cells were transfected with PEI reagent (Thermo Fisher Scientific) according to the manufacturer's instructions. The total amount of 0.6 μg of plasmid DNA per well was used, including 0.4 μg of the luciferase‐coding reporter plasmid and 25 ng of Reg‐1, Reg‐2, TTP, corresponding RNase‐inactive mutant or the empty control plasmid. The quantity of DNA/well was normalized using an empty pcDNA3.1/mycHisA vector (Invitrogen). 24 h post‐transfection cells were stimulated with IL‐1β (Invivogen) or left untreated. 24 h after stimulation cells were lysed and firefly and Renilla luciferase activity were measured using Dual‐Luciferase Reporter Assay System (Promega), according to the manufacturer's instructions. For transfection efficiency normalization the Renilla luciferase, encoded on the same plasmid as the firefly luciferase (pmirGLO), was used. Luciferase data are presented as relative luciferase activity (firefly/Renilla) and normalized to 1.
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2

Evaluating Extracellular Vesicle Immunomodulation

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HT-29/kb-seap-25 cells were seeded on 96-well plates at 3 × 104 cells/well and incubated for 24 h at 37°C under 5% CO2 prior to stimulation (Lakhdari et al., 2010 (link)). Monolayer confluence was checked under the microscope before and after every stimulation. TNFα (1 ng mL–1; PeproTech), IL-1β (1 ng mL–1; Invivogen), and LPS from E. coli O111:B4 (1 ng mL–1; L3024-5MG, Sigma-Aldrich) were used to induce inflammation. The cells were stimulated with the samples (controls and EV preparations) and inflammation inducers for 24 h. The supernatants from all the wells were then revealed with Quanti-BlueTM reagent (Invivogen) to assess SEAP activity. Cell proliferation was evaluated under all conditions using the CellTiter 96® AQueous One Solution Cell Proliferation Assay (MTS, Promega), according to the manufacturer’s instructions. Absorbance was read at 655 nm for the SEAP activity assay and at 490 nm for the MTS assay using a Xenius (SAFAS Monaco) microplate reader. For surface protein assays, 109 EV ml–1 were applied directly or after incubation at 37°C for 1 h in the presence or absence of proteinase K (20 μg mL–1; Qiagen), in order to evaluate a possible role for EV surface proteins in immunomodulation.
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3

Mechanobiological Regulation of hPDL-MSCs

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50,000 hPDL-MSCs were seeded per well in 3 mL DMEM medium supplemented with 10% FBS, 100 U/mL penicillin and 50 µg/mL streptomycin at collagen type I coated 6-well BioFlex® plates (FlexCell International Cooperation, Burlington, VT, USA). After 24 h incubation, cell cycles were synchronized by changing medium to DMEM without any FBS, supplemented with only 100 U/mL penicillin and 50 µg/mL streptomycin. After overnight-starvation, hPDL-MSCs were stimulated with 1 ng/mL or 5 ng/mL IL-1β (Invivogen, San Diego, CA, USA) using DMEM medium supplemented with either only antibiotics or with antibiotics and 2% FBS. Appropriate unstimulated hPDL-MSCs served as control. Simultaneously, STS was applied to hPDL-MSCs using the FlexCell FX-5000T™ Tension System (FlexCell International Cooperation, Burlington, VT, USA) with 6% equibiaxial elongation. IL-1β stimulated and unstimulated hPDL-MSCs, which were seeded on the same cell culture plate without applying STS served as references. 6 and 24 h later, MMP-1, MMP-2, TIMP-1 and IL-1β gene and protein expression levels were measured by quantitative polymerase chain reaction (qPCR) and ELISA, respectively. Additionally, cell viability was determined by live/dead staining followed by fluorescence microscopy 24 h after stimulation.
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4

Modulation of MAIT Cell Function by BAL Fluids

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T cells were enriched by EasySep™ Human T Cell Isolation Kit (Stemcell) from PBMCs. MAIT, CD4+ T cells were purified from those PBMCs by FACS sorting. Ten randomly pooled CAP BAL with a total 50 ml volume or 10 ml control BAL were concentrated by an Amicon® Pro Purification System with 10 kDa Amicon® Ultra-0.5 Device (Millipore) to a final volume of 5 or 1 5 × 105 T cells were cultured in IP10 medium (10% fetal bovine serum + IMDM (Gibco) and stimulated with 1:1 anti-CD3/CD28 beads (Gibco). For differentiation, 0, 5, 10, and 20 μl concentrated BAL fluids (0, 5, and 10 μl for control BAL) were added to the FACS-sorted T cells. For CD14+ monocyte-MAIT co-culture assays, 105 blood MAIT cells were cultured with 1 or 2 × 105 FACS-sorted CD14+ monocytes pooled from BALs or peripheral blood of CAP patients in the presence of anti-CD3/CD28 beads in IP10 medium for 3 days. For cytokines neutralization assays, 0, 10, and 20 ng/ml IL-1β (Invivogen) or IL-23 (Mabtech) neutralization Abs were added to 105 blood. MAIT cells were cultured with anti-CD3/CD28 beads and 10 μl concentrated BAL fluids in IP10 medium for 3 days (n = 4). Cytokines in the culture supernatants (IL-17A and IFN-γ) were measured by LEGENDplex™ bead-based immunoassays (BioLegend).
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5

Inflammatory Cytokine Activation Assay

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A total of 5 μM inflachromene (ICM; Cayman Chemical, Ann Arbor, MI, USA), 10 ng/ml human recombinant interleukin (IL)-1β (InvivoGen, San Diego, CA, USA), 250 ng/ml human IL-1 receptor antagonist (IL-1Ra; PeproTech, London, UK), 100 ng/ml lipopolysaccharide (LPS; InvivoGen), 50 ng/ml human transforming growth factor (TGF)-β3 (Miltenyi Biotec, Bergisch Gladbach, Germany).
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6

Astroglia and Neuron Modulation

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Primary astroglia were treated with WIN 55–212-2 (WIN; R&D Systems, cat. no. 1038) and IL-1β (InvivoGen, cat. no. rcyec-hil1b). Treatments were solubilized in DMSO at concentrations of 10 mM and 20 ng/μl, respectively to create stock solutions. Treatments were diluted in DMEM media with P/S 1% (100 IU) and FBS 10% to desired concentrations. Astroglia treated with vehicle were treated with an equivalent amount of DMSO as was present in the sample treated with the highest amount of solubilized WIN/ IL-1β. Primary neurons were treated with conditioned media obtained from astrocytes treated with Vehicle, WIN, IL-1β, and WIN+ IL-1β. Conditioned media was used to treat the primary neurons at a 10% concentration for 72 h before fixation.
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7

Bone Marrow-Derived Macrophage Infection Assay

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Bone marrow-derived macrophages (BMMs) were cultured for 7 days in alpha-MEM supplemented with10% fetal bovine serum (FBS) and recombinant M-CSF (30 ng/ml). 105 BMMs were plated in a 24 well plate 12–16 hr before stimulation. 10403S WT Lm, ΔactA mutant and LLO deleted (Δhly) mutant strains were grown to mid-log phase, washed with PBS, and added at a ratio of 10 to 1 cell (MOI 10). Nigericin (20 uM), IL-1β (100 ng/ml; Invivogen), or IL-18 (100 ng/ml; InvivoGen) were added 1hr before infection. 100 uM ATPγS, 10 U/ml apyrase, 100 uM ADPβS, 100 uM adenosine, and 10 U/ml adenosine deaminase were added 30 min before infection. All were purchased from Millpore Sigma. To measure phagocytosis, cells were lysed with 0.1% Triton X-100 for enumerating initial uptake for 30 min. Two hr post-infection, gentamycin was added to kill the extracellular bacteria, then two hr later, cells were lysed with 0.1% Triton X-100 and bacterial CFUs were enumerated by serial dilution.
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8

Inflammatory Stimuli Effects on hPDLSCs

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24 h after seeding an appropriate number of hPDLSCs in 6-well plates, these cells were stimulated with either 5 ng/ml IL-1β [18 (link)] or 10 ng/ml TNF-α [20 (link)] or 100 ng/ml IFN-γ [21 (link)] (all from Invivogen, San Diego, USA) in FBS-free DMEM for all performed experiments. After 48 h incubation, hPDLSCs were proceeded as indicated below. hPDLSCs were additionally treated with either 50 µM PF-06840003 (IDO-1 inhibitor) or 1 µM BMS202 (PD-1/PD-L1 inhibitor) [22 (link)] or 1 µM Celecoxib (PTGS-2 inhibitor) [23 (link)] before and during indirect co-culture (all from Selleck Chemicals, Houston, USA). PF-06840003 concentration was chosen due to its effect on IDO-1 enzymatic activity in hPDLSCs, presented in Figure S1.
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9

Inflammasome Activation by Diverse Stimuli

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Cells were primed with ultrapure LPS (10 ng/ml), P3C (100 ng/ml) (both from Invivogen), IL-1β(10 ng/ml), TNFα(10 ng/ml), IFNγ (20 ng/ml) or a Complete Cytokine Mix (CCM: 10 ng/ml IL-1β, 10 ng/ml TNFα and 20 ng/ml IFNγ) (all from R&D). Stimulation with inflammasome activators (ATP, Nigericin (both from Sigma-Aldrich), MSU (Invivogen), Alum (Pierce), poly(dA:dT) (Invivogen)) was performed as indicated in the figure legends. The amyloid beta peptide 25–35 and the reverse form 35–25 (Sigma-Aldrich) were dissolved in PBS and aliquoted at −20°C. The amyloid beta peptide 1–42 (Bachem) was used under oligomeric and fibrillar form. Fibrillar form was obtained by incubation at 37°C during 7 days in DMEM. WT and A53T mutant α-synuclein were purchased from rPeptide. Aliquots were resuspended in H2O to obtain a 100 μM solution. The preparation was incubated for 4 days at 54°C with shaking to obtain fibrillar α-synuclein or was used directly for oligomeric α-synuclein activation. Where indicated in the legends, cells were treated with high KCl (Sigma-Aldrich) medium or inhibitors (N-acetyl cystein (NAC) 5 mM (Sigma-Aldrich), (L- 3- trans- (Propylcarbamoyl)oxirane- 2- Carbonyl)- L- Isoleucyl- L- Proline Methyl Ester (Ca-074Me) 10 μM (PeptaNova), or cytochalasin D (cytoD) 2 μM (Sigma-Aldrich)) 30 min prior to addition of ATP or Alum.
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10

Investigating Reg Proteins in U251-MG Cells

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U251-MG cells were seeded in 24-well plates at a density of 1 × 105 cells/well. 24 hrs later, the cells were transfected with PEI reagent (Thermo Fisher Scientific) according to the manufacturer’s instructions. The total amount of 0.6 μg of plasmid DNA per well was used, including 0.4 μg of the luciferase-coding reporter plasmid and 25 ng of Reg-1, Reg-2, TTP, corresponding RNase-inactive mutant or the empty control plasmid. The quantity of DNA/well was normalized using an empty pcDNA3.1/mycHisA vector (Invitrogen). 24 hrs post-transfection cells were stimulated with IL-1β (Invivogen) or left untreated. 24 hrs after stimulation cells were lysed and firefly and Renilla luciferase activity were measured using Dual-Luciferase Reporter Assay System (Promega), according to the manufacturer’s instructions. For transfection efficiency normalization the Renilla luciferase, encoded on the same plasmid as the firefly luciferase (pmirGLO), was used. Luciferase data are presented as relative luciferase activity (firefly/Renilla) and normalized to 1.
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