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Omnic program

Manufactured by Thermo Fisher Scientific
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The OMNIC program is a software application developed by Thermo Fisher Scientific for the analysis and processing of spectroscopic data. It serves as a comprehensive platform for the management and manipulation of data obtained from various spectroscopic techniques, such as infrared (IR) and Raman spectroscopy.

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7 protocols using omnic program

1

FTIR Spectroscopy of Lyophilized Samples

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Lyophilized samples were mixed with KBr at a 1:50 mass ratio, ground by mortar and pestle to homogenize, and pressed into 13-mm-diameter pellets (Spex SamplePrep) for mid-range FTIR spectroscopy (Nicolet 6700 spectrometer, Thermo). Transmission FTIR spectra were collected over the region of 400–4000 cm−1 using a CO2-free purge gas generator and a deuterated triglycine sulfate (DTGS) detector with 32 interferograms averaged for each spectrum. Data collection and spectral processing, including background subtraction and baseline correction, were performed using the OMNIC program (Thermo Nicolet, Co.).
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2

FTIR Spectroscopy of Lyophilized Samples

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Lyophilized samples were mixed with KBr at a 1:50 mass ratio, ground by mortar and pestle to homogenize, and pressed into 13-mm-diameter pellets (Spex SamplePrep) for mid-range FTIR spectroscopy (Nicolet 6700 spectrometer, Thermo). Transmission FTIR spectra were collected over the region of 400–4000 cm−1 using a CO2-free purge gas generator and a deuterated triglycine sulfate (DTGS) detector with 32 interferograms averaged for each spectrum. Data collection and spectral processing, including background subtraction and baseline correction, were performed using the OMNIC program (Thermo Nicolet, Co.).
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3

Polymer Blend Characterization by FT-IR

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Infrared spectroscopy is a useful technique that can offer valuable information about interactions in polymer blends, confirming the integrity of functional groups characteristic of the synthesized materials. FT-IR spectra were recorded using the Nicolet 6700 FT-IR spectrometer, purchased from Thermo Nicolet (Madison, WI, USA). A small amount of particulate suspension was analyzed by a ZnSe crystal, and measurements were carried out through 32 sample scans between 4000 and 500 cm−1 at a resolution of 4 cm−1 at room temperature. In order to be able to register the acquired information, the spectrometer was connected to a data acquisition and processing unit through the Omnic program (version 8.2 Thermo Nicolet).
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4

Quantifying Protein Secondary Structure via ATR-FTIR

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The Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) spectra at room temperature was measured on a Nicolet iS50 FTIR spectrophotometer equipped with one pass diamond crystal ATR module (Thermo Fisher Scientific, Waltham, MA). The spectrometer was purged with N2 to remove the contribution of atmospheric water vapor and CO2 from all spectra. Each spectrum was an average of 100 scans at room temperature with a resolution of 2 cm-1 in the spectral range of 4000–400 cm−1. At indicated time points (0h–144h), 5 μl protein samples were taken out of the incubator and dropped on top of the ATR crystal. Raw data corresponding to amide-I region (1700–1600 cm-1) were deconvoluted by using the Fourier self-deconvolution (FSD) method. The deconvoluted spectra in the amide-I region were subsequently subject to Gaussian curve-fitting procedure in order to quantify the secondary structure content in aS. The water component was subtracted from each of the sample spectra. Data analysis was performed with Omnic program (Thermo Fisher Scientific, MA) and OriginPro 2015 (OriginLab Corporation, MA), according to the manufacturers’ instructions.
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5

Fourier Transform Infrared Spectroscopy

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FT-IR spectra were recorded on a Nicolet™ iS™ 5 FTIR Spectrometer (Thermo Scientific, Waltham, MA, USA), with a horizontal device for attenuated reflectance and diamond crystal, on a spectral window ranging from 4000 to 400 cm−1, at a spectral resolution of 2 cm−1. Spectra were recorded without any sample preparation and were processed with the OMNIC program (Thermo Scientific, Waltham, MA, USA).
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6

Characterizing Metal Electronic States Using DRIFT

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Diffuse reflectance IR spectra (DRIFT) were recorded at room temperature using a NICOLET protégé 460 spectrometer (Thermo Scientific, Waltham, MA, USA) with a diffuse-reflectance attachment in the range of 6000–400 cm–1 with a step of 4 cm–1. For a satisfactory signal-to-noise ratio, 500 spectra were accumulated. CaF2 powder was used as a standard. Before measuring the spectra, samples in granular form (fraction 50–200 mesh) were subjected to thermal vacuum treatment at a temperature of 450 °C for 2 h (heating rate 5 °C/min) to remove physically adsorbed gases and water. Carbon monoxide was used as a test molecule for the electronic state of metals. Adsorption was carried out at room temperature and equilibrium CO pressure of 15 Torr. The intensity of the bands in the spectra was expressed in Kubelka–Munk units. Data collection and processing were carried out using the OMNIC program (Thermo Scientific, Waltham, MA, USA). The spectra of adsorbed CO were presented as the difference between those recorded after and before adsorption.
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7

FTIR Analysis of TCP Particle Surfaces

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FTIR spectroscopy was performed to analyze the TCP particle surface. Each of the samples (HA-TCP, Chitosan, and Chi/HA-TCP particles) was placed onto the diamond ATR window of an Avatar 360 Thermo Nicolet spectrometer and scanned over the range of 500-4000 cm−1 with a resolution of 4 cm−1 in transmission mode. The baselines of the spectra were corrected and normalized using OMNIC program (ThermoScientific software for FTIR data collection and analysis).
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