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6 protocols using pyridine

1

Quantification of Fructose Compounds

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High-fructose corn syrup (F55) was supplied by Guangzhou Shuangqiao Co., Ltd. (Guanzhou, China). Nonadecanoic acid was purchased from Sigma-Aldrich (Sigma, San Diego, USA). Methanol, hexane, and chloroform were of HPLC (High Performance Liquid Chromatography) grade and were from Merck (Darmstadt, German). Pyridine, O-methylhydroxylamine hydrochloride, N-methyl-N-(trimethylsilyl) trifluoroacetamide (MSTFA), and trimethylchlorosilane (TMCS) were from J&K Scientific Co. Ltd. (Tianjing, China).
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2

Sterol Lipid Characterization Protocol

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Chemical standards of sterol lipids were purchased from J&K Scientific (Shanghai, China), Avanti Polar Lipids (Alabaster, USA), Steraloids (Newport, RI, USA), and Sigma-Aldrich (St. Louis, MO, USA). Acetic acid was purchased from Fisher Scientific (Morris Plains, NJ, USA). Picolinic acid, pyridine, and 2-methyl-6-nitrobenzoic anhydride (MNBA) were purchased from J&K Scientific (Shanghai, China). 4-dimethylaminopyridine (DMAP) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Triethylamine (TEA) was purchased from China National Pharmaceutical Group Corporation (Shanghai, China). Potassium hydroxide was purchased from BBI Life Science Corporation (Shanghai, China). Butylated hydroxytoluene (BHT) was purchased from Sigma-Aldrich (St. Louis, MO, USA). LC-MS grade water (H2O), acetonitrile (ACN), methanol (MeOH), HPLC grade dichloromethane (DCM), and HPLC grade hexane were purchased from Honeywell (Muskegon, MI, USA).
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3

Zeb1/2 Gene Silencing Nano-Delivery

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Branched polyethyleneimine (PEI, Mw 2 kDa), 2-(N,N-diethylamino)ethyl methacrylate (DEA), Cysteamine (95%), Azobisisobutyronitrile (AIBN), Succinic anhydride (SA), cis-Aconitic anhydride, dimethyl sulfoxide (DMSO), Triethylamine (TEA), pyridine, and acetone were purchased from J&K Scientific Ltd. (Beijing, China). ZrOCl2∙8H2O, Tetrakis (4-carboxyphenyl)porphyrin (TCPP), N,N-Dimethylformamide (DMF), N-ethyl-N-(3-(dimethylamino)-propyl) carbodiimide hydrochloride (EDC), and N-hydroxysuccinimide (NHS) were supplied by Aladdin Industrial Co., Ltd. (Shanghai, China). The siZEB1 (GTT​GTT​CTG​CCA​ACA​GTT​G) and siZEB2 (GGC​CGA​ATG​AGA​AAC​AAT​A) target both human and mice’s genes, and Cy5-labeled siZEB1/2 were designed and synthesized by RiboBio (Guangzhou, China). Lipofectamine 2000 was purchased from Invitrogen (Carlsbad, United States), and the LPS was obtained from Sigma-Aldrich (Missouri, United States). The Cell Counting Kit-8 (CCK-8) was bought from Boster Biological Technology (Wuhan, China). DAPI and total RNA Reagent Trizol were purchased from Life Technologies (New York, United States). The PrimeScript®RT Reagent Kit with gDNA Eraser was provided by TaKaRa (Beijing, China). Quantitative real-time qPCR kits (iTaq™ universal SYBR® Green Supermix) were purchased from Bio-Rad (California, United States).
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4

Metabolite Extraction and Derivatization

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Methanol (HPLC-grade), pyridine (HPLC-grade), methoxyamine hydrochloride, margaric acid N,O-bis (trimethylsilyl) trifluoroacetamide (BSTFA) containing 1% trimethylchlorosilane (TMCS) (V:V) were obtained from Sigma-Aldrich. Acetonitrile (HPLC-grade) and formic acid were obtained from Merck. 2-morpholinoethanesulfonic acid (MES) was obtained from J&K Scientific Ltd. methoxyamine hydrochloride was dissolved in pyridine. Margaric acid and MES were dissolved in Methanol and used as the internal standard for GC-MS and LC-MS, respectively. The concentrations of margaric acid and MES were 60 mM and 400 μM, respectively.
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5

Analytical Methods for Herbal Compound Profiling

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HPLC-grade methanol, isopropanol, acetonitrile, methoxamine salt, pyridine, pentobarbital and N-paraffin mix used for calculating retention index were purchased from J&K Scientific Ltd. (Shanghai, China). HPLC-grade N-methyl-N-trimethylsilyltrifluoroacetamide and the standard substances including l-norvaline, l-lysine, l-tyrosine, l-phenylalanine, l-serine, l-valine, l-glutamic acid, l-alanine, l-proline, l-ornithine, d-glucose, sucrose, urea, lactic acid and fluoxetine were purchased from Sigma-Aldrich Ltd. (Shanghai, China). The standard products of the six herbs included in TSD were bought from Desite Company (Chengdu, China). Ultrapure water was prepared by the Milli-Q system (Merck, Darmstadt, Germany).
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6

Quantitative Analysis of Short-Chain Fatty Acids

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Acetic acid (Lot No. C0027517, ≥99.7%) and propionic acid (Lot No. A15J7L9136, ≥99.5%) were purchased from Dr. Ehrenstorfer (Augsburg, Germany). Butyric acid (Lot No. 755WP0-JS, ≥99.8%) and valeric acid (Lot No. FGN01-JLBK, ≥99.0%) were purchased from TCI Development Co., Ltd. (Shanghai, China). Hexanoic-6,6,6-d3 acid (Lot No. ZZS17102803, 99.0%) was purchased from Shanghai Zzbio Co., Ltd. (Shanghai, China). Sodium hydroxide (Lot No. 160928, ACS grade) was purchased from Xilong Scientific Co., Ltd (Beijing, China). 1-Propanol (Lot No. LP700111, HPLC grade) and pyridine (Lot No. LB30R04, HPLC grade) were purchased from J&K Scientific Ltd. (Beijing, China). Propyl chloroformate (Lot No. 11502046, HPLC grade) and hexane (Lot No. E1725082, HPLC grade) were purchased from Shanghai Aladdin Bio-Chem Technology Co., Ltd. (Shanghai, China).
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