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7 protocols using phosphate buffered saline (pbs)

1

Isolation of Thermophilic Bacteria from Diverse Environments

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Solid samples were harvested from fermenting hay (1 g) (Zgierz, Poland, 51°51'24.8"N 19°23'42.9"E) and extracted during 60 min of mixing, in 100 mL of phosphate-buffered saline (PBS; Chempur, Gliwice, Poland) with the addition of 1 mL of polysorbate 80 (Biomaxima, Lublin, Poland). Liquid samples, containing rotting plant fragments, derived from geothermal karst spring (64°18'34.7"N 20°18'12.6"W), hot spring (64°00'34.3"N 21°11'04.9"W) and vicinity of geothermal pond Blue Lagoon (63°52'50.5"N 22°26'52.4"W) (all originating from Iceland) were used directly. Screening of thermophilic bacteria was performed using serial dilution and spread plate technique on nutrient Gelzan™ medium. It was prepared by solidification of nutrient broth (BTL, Lodz, Poland) with the addition of gellan gum 8 g/L (Gelzan™; Sigma-Aldrich, Merck, St. Louis, MO, USA) and MgSO4 1 g/L (Chempur, Piekary Slaskie, Poland). Single colonies were picked after 48 h of incubation at 50 or 60 °C. Pure cultures of isolated bacteria were kept frozen at -80 °C in glycerol stocks.
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2

Silanization and Lactadherin Immobilization

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Materials and reagents: Silicon wafers (cat. no. 647780, Sigma Aldrich, St. Louis, MO, USA); 99% ethanol absolute (cat. no. 396480111, POCH); toluene (cat. no. 244511, Sigma Aldrich); chloroform (cat. no. 234431116, POCH); glutaraldehyde (cat. no. 424610237, Chempur, Karlsruhe, Germany); PBS (cat. no. P4417, Sigma Aldrich); human lactadherin (LACT; cat. No. 10853-H088 LC11NO 2901, Sino Biological Inc.), [(3-aminopropyl)triethoxysilane]; APTES (cat. no. 440140, Sigma Aldrich), [(3-glycidyloxypropyl)trimethoxysilane]; GOPS (cat. no. 440167, Sigma Aldrich); bovine serum albumin (BSA; cat. no. 05470, Sigma Aldrich); and cacodylic buffer (Cat. number C4945, Aldrich, St. Louis, MO, USA).
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3

Synthesis and Characterization of PEG-Based Drug Delivery Systems

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ε-Caprolactone (2-Oxepanone, CL, 97%, Aldrich, Poznan, Poland), zirconium(IV) acetylacetonate (tetrakis(2,4-pentanedionato)zirconium(IV), Zr(acac)4, 97%, Aldrich, Poznan, Poland), poly(ethylene glycol) 200 (PEG 200, Mn = 200 g/mol, pure, Fluka, Warsaw, Poland), poly(ethylene glycol) 600 (PEG 600, Mn = 600 g/mol, pure, Fluka, Warsaw, Poland), poly(ethylene glycol) 1000 (PEG 1000, Mn = 1000 g/mol, pure, Sigma-Aldrich, Poznan, Poland), poly(ethylene glycol) 1500 (PEG 1500, Mn = 1500 g/mol, pure, Sigma, Poznan, Poland), poly(ethylene glycol) 2000, (PEG 2000, Mn = 2000 g/mol, pure, TCI, Zwijndrecht, Belgium), dichloromethane (DCM, CH2Cl2, ≥99.8%, POCh, Gliwice, Poland), hydrochloric acid (HCl, ChemPur, Piekary Slaskie, Poland), Dulbecco’s Modified Eagle Medium (DMEM, Thermo Fisher Scientific, Warsaw, Poland), 5-fluorouracil (5-fluoropyrimidine-2,4-[1H,3H]-dione, 5-FU, 99%, Sigma-Aldrich, Poznan, Poland), phosphate-buffered saline (PBS, pH = 7.40 ± 0.05, ChemPur, Piekary Slaskie, Poland), phosphate-buffered saline for cell cultures (PBS, GIBCO, Dublin, Ireland), acetonitrile (ACN, HPLC grade min. 99.9%, POCH, Gliwice, Poland) and trifluoroacetic acid (TFA, 99%, Sigma-Aldrich, Poznan, Poland). Prior to use, PEGs compounds were heated in a vacuum for 2 h at 80 °C to remove residual water. Other reagents were used as received.
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4

Synthesis and Characterization of Biodegradable Polymeric Carriers

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Glycolide (1,4-dioxane-2,5-dione, ≥99%, Sigma, Poznan, Poland), L,L-Lactide ((3S)-cis-3,6-dimethyl-1,4-dioxane-2,5-dione, 98.0%, Aldrich Co., Poznan, Poland), poly(ethylene glycol) 600 (PEG 600, pure, Fluka, Warsaw, Poland), ZnEt2 solution (15% diethylzinc in toluene, Aldrich Co., Poznan, Poland), hydrochloric acid (HCl, ChemPur, Piekary Slaskie, Poland), methanol (pure, 99.9%, ChemPur, Piekary Slaskie, Poland), dichloromethane (DCM, CH2CL2, ≥99.8%, POCh, Gliwice, Poland), chloroform (pure, 99%, ChemPur, Piekary Slaskie, Poland), metoprolol tartrate (>98.0%, TCI, Tokyo, Japan), phosphate-buffered saline (PBS, pH 7.00 ± 0.05, ChemPur, Piekary Slaskie, Poland), Kalliphor® P 188 (Poloxamer 188, Lutrol® F68, Aldrich Co., Poznan, Poland) Poloxamer 407 (Aldrich Co., Poznan, Poland), PVP (Mw 40,000, Aldrich Co., Poznan, Poland), Tween 80 (viscous liquid, Aldrich Co., Poznan, Poland), Sodium alginate (Aldrich Co., Poznan, Poland), HPC (TCI, Tokyo, Japan), Liquid paraffin (ChemPur, Piekary Slaskie, Poland), Trifluoroacetate acid (TFA, ≥98%, Sigma, Poznan, Poland), n-heksan (99%, POCh, Gliwice, Poland), stock solution of Zn(II) (concentration 1000 mg/L, Merck, Darmstadt, Germany), 65% nitric acid (HNO3, J.T. Baker, Deventer, Netherlands), dialysis membrane Spectra/Por 3 MWCO 3500 (Spectrum Laboratories, Inc., Gardena, CA, USA) were used as received.
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5

Antioxidant and Enzyme Assay Protocol

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2,2-diphenyl-1-picrylhydrazyl (DPPH), 6-hydroxy-2,5,7,8-tetramethylchroman-2carboxylic acid (Trolox), 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), 2,4,6-tripyridyl-s-triazine (TPTZ), 3,4-dihydroxybenzoic acid, chlorogenic acid, caffeic acid, acetylsalicylic acid, bovine albumin serum (BSA), linoleic acid sodium salt (≥98%), quercetin, rutin, and soybean lipoxygenase were purchased from Sigma Aldrich (Steinheim am Albuch, Germany); Folin–Ciocalteu reagent, gallic acid, 4-hydroxybenzoic acid, 3-hydroxybenzoic acid, disodium phosphate, propylene glycol, and potassium dihydrogen phosphate from Merck, Darmstadt (Germany); sodium acetate anhydrous, potassium persulfate, potassium acetate, 99.5% acetic acid, 36% hydrochloric acid, sodium chloride, potassium chloride, ethanol, methanol, acetone, and phosphate-buffered saline (PBS; pH 7.00 ± 0.05) were from Chempur (Piekary Śląskie, Poland), whereas acetonitrile for HPLC was from J.T. Baker (Berlin, Germany). Hydroxyethylcellulose, 1,10-phenanthroline, and succinyl-alanyl-alanyl-prolyl-valine chloromethylketone (SPCK, Abcam, Cambridge, MA, USA) were used as received. All reagents were of analytical grade.
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6

Betulin Synthesis and Derivative Preparation

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The following compounds were used for the preparation of betulin, and the synthesis of its derivatives: 4-dimethylaminopyridine (DMAP), acetic anhydride (Ac2O), carbon tetrachloride (CCl4), tetrahydrofuran (THF), dichloromethane (DCM), palladium on carbon (10% Pd/C), pyridinium chlorochromate (PCC), 3-chloroperbenzoic acid (mCPBA), lithium aluminum hydride (LiAlH4), tert-butyl(chloro)diphenylsilane (TBDPSCl), purchased from Sigma Aldrich (Steinheim am Albuch, Germany), KOH, hexane, methanol, ethyl acetate, acetone, MgSO4, ethanol, purchased from Chempur (Piekary Śląskie, Poland). All reagents were of analytical grade.
For the determination of the antioxidant activity and to assess the skin permeation of the compounds obtained: acetonitrile for HPLC was from J.T. Baker (Berlin, Germany). 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) and 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (TE), were purchased from Sigma Aldrich (St. Louis, MO, USA); Folin–Ciocalteu reagent and gallic acid (GA), were from Merck (Darmstadt, Germany), potassium persulfate and chloride, sodium chloride, methanol, ethanol, acetone and phosphate buffered saline (PBS, pH = 7.4) were purchased from Chempur (Piekary Śląskie, Poland). All reagents were of analytical grade.
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7

Spectrophotometric Determination of Metal Ions

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Xylenol Orange (cat. no. chem*237045902*5g) was obtained from Polish Chemical Reagents (POCh, Gliwice, Poland), perchloric acid (HClO4; cat. no. chem*115649402*1l) was purchased from Chempur (Piekary Śląskie, Poland), phosphate-buffered saline (PBS: 145 mM NaCl, 1.9 mM NaH2PO4, 8.1 mM Na2HPO4, cat. no. PBS405) was obtained from Lab Empire (Rzeszów, Poland). Dulbecco’s Modified Eagle Medium + GlutaMax (DMEM+GlutaMax) (cat. no. 21885-025) and Dulbecco’s Modified Eagle Medium (DMEM) (cat. no. 12430-054) and Dulbecco’s Phosphate Buffered Saline (DPBS) (cat. no. 14040-117) were purchased from Thermofisher Scientific (Waltham, MA, USA). All other reagents, if not mentioned otherwise, were purchased from Sigma-Aldrich Corp. (St. Louis, MO, USA) and were of analytical grade. Distilled water was purified using a Milli-Q system (Millipore, Bedford, MA, USA). In cell free system analysis absorptiometric measurements were done in a Spark multimode microplate reader (Tecan Group Ltd., Männedorf, Switzerland). Distilled water was purified using a Milli-Q system (Millipore, Bedford, MA, USA).
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