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Cyquant nf

Manufactured by Thermo Fisher Scientific
Sourced in United States

The CyQuant NF Cell Proliferation Assay Kit is a fluorescence-based method for quantifying the number of cells in a sample. It measures cellular DNA content using a fluorescent DNA-binding dye. The assay provides a simple, sensitive, and accurate way to determine cell proliferation or cytotoxicity in cell-based experiments.

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10 protocols using cyquant nf

1

Quantifying Cell Populations on Materials

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The cell populations on the materials were measured by estimating the cellular content in the media supernatant and on the ultralow attachment plate surfaces using a nucleic acid quantification assay (CyQUANT NF, Thermo, Cat. C35007) as per the manufacturer’s instructions. Briefly, lysis buffer with the CyQUANT reagent were added to the cells/cell pellet and incubated for 30 min. This was read using a fluorescent plate reader (Thermo Fluoroskan Ascent FL) at an excitation of 485 nm and emission of 527 nm. A standard curve was created using known numbers of THP-1 cells to establish the relationship between the readout and the cell population.
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2

Measuring Cellular Metabolic Fluxes

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To estimate the rate of glycolysis and mitochondrial respiration, a Seahorse Metabolic Flux Analyzer e96 XF instrument (Agilent) was used according to the manufacturer’s manual. 20,000 cells/well of KPC, KCip53-1, or KCip53-2 cells were seeded in the respective culture media the day prior to the assay. The next day media was exchanged to the Seahorse assay media, containing 25 mM glucose, adjusted to 7.4 pH. The cell plate was allowed to equilibrate for 1 hour in a non-CO2, 37°C incubator, and following 3 sequential measurements for the basal respiration, a Seahorse XF Mito Stress assay (Agilent) was performed by injections of 1 μM oligomycin, 1 μM FCCP, 0.5 μM rotenone/0.5 μM antimycin A. All the chemicals were obtained from Sigma-Aldrich. The cell number adjustment was performed using CyQuant NF (Thermo) after the assay. The data are presented as mean and SD.
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3

Metabolic Flux Analysis of Cells

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To estimate the rate of glycolysis and mitochondrial respiration, a Seahorse Metabolic Flux Analyzer e96 XF instrument (Agilent) was used according to the manufacturer’s suggestion. 50,000 cells/well were seeded in the respective polarization culture media the day prior to the assay. The next day media was exchanged to the Seahorse assay media, containing 25 mM glucose, adjusted to pH~7.4. The plate was allowed to equilibrate for 1 hour in a non-CO2, 37°C incubator, followed by 3 sequential measurements for the basal respiration. The mitostress assay was performed by sequentially injecting 2μM oligomycin, 5μM FCCP, 0.5μM rotenone/0.5μM anti-mycin A. The cell number adjustment/normalization was performed using CyQuant NF (Thermo) after the assay.
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4

Viability Assays for hBMECs

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Live/dead and CyQuant viability assays were performed as previously described (12 (link)). For live/dead assays, hBMECs were costained with calcein-AM (live/green, 3 μM; Invitrogen) and propidium iodide (dead/red, 2.5 μM; Calbiochem). calcein-AM-positive versus PI-positive cells were resolved using an Olympus IX51 microscope and overlaid using Adobe Photoshop. hBMECs were incubated with CyQuant-NF (Thermo Fisher), and fluorescence was quantified using a BioTek FLx800 fluorimeter.
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5

Proliferation Assay of HEC-1-A Cells

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Relative proliferation of cells was studied, using the CyQUANT®NF assay (Invitrogen, Carlsbad, CA, USA). Briefly, 500, 1000 and 3000 cells of HEC-1-A and HEC-1-A-S18-2 were grown in triplicates in a 96 well plate overnight in IMDM medium. After medium was removed, an aliquot of fluorescent dye was added and cells were incubated for 60 min at 37°C. After incubation, the fluorescence intensity was measured at λ=530 nm, using microplate reader Omega (BMG Labtech, Ortenberg, Germany). Percentage proliferation was calculated for HEC-1-A-S18-2 in comparison with control cells HEC-1-A, taken as 100%.
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6

Cell Proliferation Assay Using CyQUANT NF

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NIH3T3 and HT1080 cells were seeded in a 96-well plate at 1000 cells/well and incubated for 4 h. Growth medium was then carefully removed and 1× CyQUANT NF (Invitrogen) dye reagent was added. Cells were then incubated at 37°C for 1 h. This incubation period is required for equilibration of dye–DNA binding, resulting in a stable fluorescence endpoint. The fluorescence intensity of each sample was measured every 24 h using a fluorescence microplate reader with excitation at ∼485 nm and emission detection at ∼530 nm. Fresh growth medium was added every 48 h. Cell numbers at each time point were determined using a standard curve as per the manufacturer's instructions.
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7

Immunoregulatory Mechanism of CD4+ T cells

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The materials used were L-NMMA 1 mМ (Sigma), 1-МТ (Sigma), antihuman ICAM-1 SC-107L (Santa Cruz), antihuman IDO (H-110 sc-25808, Santa Cruz), antihuman iNOS (aa 781-798, Clone 2D2-B2, MAB9502, R&D Systems), antihuman CD28 NA/LE (BD 555725), antihuman CD3 NA/LE (BD 555336), antihuman CD4 (558116, BD PharMingen), antihuman CD25 (555346, BD PharMingen), antihuman CD45 (304026, BioLegend), antihuman CD3 (300431, BioLegend), antihuman CD90 (328110, BioLegend), antihuman CD 73 (344006, BioLegend), antihuman HLA-DR (307610, BioLegend), transwell permeable membranes 0.4 μm (Greiner 665640), TRIzol® Reagent (Invitrogen, 15596-018), CyQUANT®NF (C35006, Invitrogen), Maxima SYBR Green/ROX qPCR Master Mix (2X) (K0221 Thermo Scientific), SuperScript® III Reverse Transcriptase (Thermo Scientific), and SuperSignal™ West Pico Chemiluminescent Substrate (34078 Thermo Scientific).
All donors were notified and agreed to take part in the research according to the draft Declaration on Bioethics and Human Rights (SHS/EST/05/CONF.204/3 REV) paragraph 6 items b and c. All operational procedures and protocols were strictly followed in accordance with MSU bioethics committee guidelines. All experimental protocols were conducted according to the GLP rules signed by the Ministry of Health (Order number 267 from 19 June 2003).
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8

Quantifying ASM Cell Proliferation via DNA

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Proliferation of ASM cells based on DNA content was measured as described previously (70 (link)). Briefly, ASM cells were grown in 96-well plates (~5,000 cells/ well), serum-deprived, transfected with siRNA, exposed to 1% CSE for 48h and incubated with CyQuant NF (Invitrogen) for 30 min. Dye (CyQuant) binding to DNA (fluorescence) was measured on a FlexStation3 microplate reader (Molecular Devices, Sunnyvale, CA). Dye calibrations and normalization were performed, as previously described (70 (link)).
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9

Stem Cell Differentiation Protocol

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Laminin (23017-95), CyQUANT NF (C35006), bovine pituitary extract (13038-14), HBSS, RPMI, DMEM, DMEM:F12, penicillin-streptomycin, pyruvate solution, fetal bovine serum (FBS), BODIPY 493/503 (D3922), B-27™ Supplement (50X), serum free (17504044) were from Life Technologies; Recombinant Human FGF-basic (100-18B) from Peprotech; doxycycline hyclate (D9891), nicotinamide (N3376), dexamethasone (D4902), 2-deoxyglucose (D6134), Sodium oxamate (O2751), collagenase (C7657), glucose (G7528), tamoxifen (T5648), Sodium oleate (O7501), Bovine Serum Albumin (A7030), Alcian Blue (B8438), Roche cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail (11836170001), ROCK inhibitor: Y-27632 (SCM075) were from Sigma;, Forskolin (1099), IBMX (2845), KT5720 (1288), WWL113 (5259) were from Tocris; mouse EGF (354001), NuSerum IV (355104), ITS+ Premix (354352) and Matrigel (354234) were from Corning; dispase (165–859; Roche); Sp-8-Br-cAMPS (B002 ) and 8-pCPT-2′-O-Me-cAMP (C041) were from Biology Life Science Institute; Oleic acid-[1-14C] was from Perkin-Elmer (NEC315070UC); 4-Bromocrotonic Acid (BrCA) (B2298) was from TCI America; iTaq universal SyBR Green Supermix (BIO-RAD), Protein Block (X0909; DAKO); MACH2 HRP-Polymer (HRP520H) and Betazoid DAB Chromogen Kit (BDB2004H) from Biocare Medical; HG-9-91-01 and KIN112 were kindly provided by Dr. Nathanael Gray.
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10

Stem Cell Differentiation Protocol

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Laminin (23017-95), CyQUANT NF (C35006), bovine pituitary extract (13038-14), HBSS, RPMI, DMEM, DMEM:F12, penicillin-streptomycin, pyruvate solution, fetal bovine serum (FBS), BODIPY 493/503 (D3922), B-27™ Supplement (50X), serum free (17504044) were from Life Technologies; Recombinant Human FGF-basic (100-18B) from Peprotech; doxycycline hyclate (D9891), nicotinamide (N3376), dexamethasone (D4902), 2-deoxyglucose (D6134), Sodium oxamate (O2751), collagenase (C7657), glucose (G7528), tamoxifen (T5648), Sodium oleate (O7501), Bovine Serum Albumin (A7030), Alcian Blue (B8438), Roche cOmplete, Mini, EDTA-free Protease Inhibitor Cocktail (11836170001), ROCK inhibitor: Y-27632 (SCM075) were from Sigma;, Forskolin (1099), IBMX (2845), KT5720 (1288), WWL113 (5259) were from Tocris; mouse EGF (354001), NuSerum IV (355104), ITS+ Premix (354352) and Matrigel (354234) were from Corning; dispase (165–859; Roche); Sp-8-Br-cAMPS (B002 ) and 8-pCPT-2′-O-Me-cAMP (C041) were from Biology Life Science Institute; Oleic acid-[1-14C] was from Perkin-Elmer (NEC315070UC); 4-Bromocrotonic Acid (BrCA) (B2298) was from TCI America; iTaq universal SyBR Green Supermix (BIO-RAD), Protein Block (X0909; DAKO); MACH2 HRP-Polymer (HRP520H) and Betazoid DAB Chromogen Kit (BDB2004H) from Biocare Medical; HG-9-91-01 and KIN112 were kindly provided by Dr. Nathanael Gray.
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