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6 protocols using mneongreen

1

Plasmid Collection for Fluorescent Imaging

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The following plasmids, generated in this study, are available on Addgene (http://www.addgene.org/): 129625, dTomato-2xrGBD (C1 vector); 176098, dimericTomato-2xrGBD (pLV vector); 129624, mNeonGreen-2xrGBD; 176091, mNeonGreen-3xrGBD; 129633, mNeonGreen-aGBD (anillin); 129634, mNeonGreen-pGBD (PKN1 codon optimized); 176094, H2A-mTurquoise2-CDC42-G12V-ΔCaaX; 176095, H2A-mTurquoise2-RAC1-G12V-ΔCaaX; and 176097, H2A-mTurquoise2-RHOA-G14V-ΔCaaX.
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2

PSD-95-binding Nanobody Construct Generation

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The PSD-95-binding nanobody construct pCAG_Xph15-mTurquoise2-CCR5TC was generated via Gibson assembly by exchanging mNeonGreen (pCAG_Xph15-mNeonGreen-CCR5TC, Addgene 135533; [18 ]) with mTurquoise2. The sequence of the final construct was verified via PCR sequencing. pENN.AAV.CAG.tdTomato.WPRE.SV40 was obtained via Addgene (105554; Wilson lab). pGP-AAV-syn-jGCaMP7b-WPRE was obtained via Addgene (104489, [19 (link)]
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3

Multicolor Nerve Labeling with AAVs

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AAV vector genome plasmids harboring CAG-driven mNeonGreen, mRuby2, and mTurquoise2 transgene cassettes were purchased from Addgene. pAAV-CAG-mNeonGreen was a gift from Pantelis Tsoulfas (RRID:Addgene_124101). pAAV-CAG-mTurquoise2 (RRID:Addgene_99122) and pAAV-CAG-mRuby2 (RRID:Addgene_99123) were a gift from Viviana Gradinaru (Fig. 1a).

Multicolor nerve labeling approach and identification of parasympathetic subpopulations. (a,b) Schematic of multicolor AAV vector approach and AAV vector genome plasmids. Mouse airways before (c) and after (d) passive clearing in Ce3D. (e) Whole mouse trachea and lungs showing multicolor parasympathetic ganglia.

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4

Fluorescent Protein Constructs for Live-Cell Imaging

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When Atto 532 (A532, Sigma) was included in the bath solution, the dye concentration was 30 μM. The PH-EGFP (phospholipase C delta PH domain attached with EGFP) was obtained from Dr. Tamas Balla. PH-mNeonGreen (PHG) and PH-mTFP1 construct were created by replacing the EGFP tag of PH-EGFP with mNeonGreen (Allele Biotechnology)51 (link) or mTFP1 (Addgene), respectively. Dynamin 1-K44A-mRFP was purchased from Addgene (#55795). Dynamin 2-mTFP1 (or dynamin 1-mTFP1) and dynamin 2-mNeonGreen construct were created by replacing the EGFP tag of dynamin 2-EGFP (or dynamin 1-EGFP, Addgene) with mTFP1 or mNeoGreen, respectively. Lifeact-mTFP1 construct was created by replacing the TagGFP2 of lifeact-TagGFP2 (Ibidi) with mTFP1.
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5

Fluorescent Protein Sensor Construction

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We constructed all sensors by polymerase chain reaction (PCR) cloning. The template for the mScarlet moiety of the protein fusions originated from pmScarlet_C1 (#85042, Addgene). The template for the Troponin C (TnC) moieties originated from Twitch-2B (#100040, Addgene) and Twitch-3 (#49532, Addgene). The sfGFP, mNeon, mCitrine, mVenus, and mClover moieties of the fused proteins originated from sequences of msfGFP (# 91902, Addgene), mNeonGreen (#58179, Addgene), Twitch-3 (#49532, Addgene), Twitch-2B (#100040, Addgene), and mClover3 (#74252, Addgene), respectively. We added a nuclear-export sequence (MLQNELALKLAGLDINKTG)10 (link),56 (link) at the N-terminus to localize the sensor expression to the cytoplasm. The sequences of all sensors are in Supplementary Table 2. To express the fused proteins in HEK293 cells, we inserted the genes into a lentivirus backbone under the CamkIIα promoter (#48762, Addgene). To express the fused proteins in cultured neurons and in live mice, we inserted the genes into an adeno-associated virus backbone under the CamkIIα promoter (#26969, Addgene). To express the fused protein in bacteria, we inserted the genes into the pET-28b backbone (69865-3, Millipore Sigma) while fusing the sensors to a 6× His tag.
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6

Cas9-mediated gene knockout validation

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Cas9 expressing RH4 cells were generated by transduction of wildtype cells with lentiviral vector coding Cas9 and mNeonGreen (Addgene) followed by sorting. Activity of Cas9 in these cells was tested using Cas9 activity reporter with BFP (Addgene). The lentiviral vectors coding individual sgRNAs (Table S5A) were generated by cloning single guide sequences using the In-Fusion cloning system (Clontech, 638909) into the sg_shuttle_RFP657 vector (Addgene). After transduction of Cas9 expressing cells, efficiency of sgRNA delivery was assessed by flow cytometry. Knockout of individual target genes was validated by western blot anaylsis at indicated timepoints.
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