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Gradient 4 15 sds polyacrylamide gels

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Gradient (4-15%) SDS-polyacrylamide gels are laboratory equipment used for protein separation and analysis. The gels have a gradient composition of 4-15% polyacrylamide, which allows for the separation of proteins based on their molecular weight.

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3 protocols using gradient 4 15 sds polyacrylamide gels

1

Quantifying Myosin and Actin Content

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Determination of myosin and actin content were performed as previously described by our laboratory [19 (link)] and others [25 (link)]. Briefly, SDS-PAGE preps were made using 10 μL resuspended myofibrils, 65 μL distilled water (diH2O), and 25 μL 4x Laemmli buffer. Samples (15 μL) were then loaded on pre-casted gradient (4–15%) SDS-polyacrylamide gels (Bio-Rad Laboratories) and subjected to electrophoresis at 200 V for 40 minutes using pre-made 1x SDS-PAGE running buffer (Ameresco). Following electrophoresis gels were rinsed in diH2O for 15 minutes, and immersed in Coomassie stain (LabSafe GEL Blue; G-Biosciences; St. Louis, MO, USA) for 2 hours. Thereafter, gels were destained in diH2O for 60 minutes, bright field imaged using a gel documentation system (UVP), and band densities were determined using associated software. Given that a standardized volume from all samples were loaded onto gels, myosin and actin band densities were normalized to input muscle weights for relative expression. Our laboratory has reported that this method yields exceptional sensitivity in detecting 5–25% increases in actin and myosin content [19 (link)]. Notably, actin and myosin content were the only two myofibrillar protein targets of interest given that the combination of these proteins make up a majority (~70%) of the myofibrillar protein pool [20 (link)].
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2

SDS-PAGE Analysis of Myofibril Proteins

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SDS-PAGE preps from resuspended myofibrils were performed using: (a) 10 μL resuspended myofibrils, (b) 65 μL distilled water (diH2O), and (c) 25 μL 4x Laemmli buffer. Samples were then loaded (15 μL) on pre-casted gradient (4–15%) SDS-polyacrylamide gels (Bio-Rad Laboratories, Hercules, CA, USA) and subjected to electrophoresis (200 V for 40 min) using pre-made 1x SDS-PAGE running buffer (Ameresco, Framingham, MA, USA). Following electrophoresis gels were rinsed in diH2O for 15 min, and immersed in Coomassie stain (LabSafe GEL Blue; G-Biosciences, St. Louis, MO, USA) for 2 h. Thereafter, gels were destained in diH2O for 60 min, bright field imaged using a gel documentation system (UVP), and band densities were determined using associated software. Myosin and actin content were expressed as arbitrary units/mg muscle.
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3

Protein Expression Analysis by Western Blot

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After treatment, cells were washed twice with ice-cold PBS and harvested in RIPA buffer [25 mM Tris (pH7.6), 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate 0.1% SDS; Thermo Fisher Scientific, Waltham, MA, USA]. Protein concentrations were measured using the BCA protein assay kit (Thermo Fisher Scientific). Protein was electrophoresed on gradient (4-15%) SDS-polyacrylamide gels (Bio-Rad, Hercules, CA, USA), transferred to polyvinylidene fluoride membranes (ATTO, Tokyo, Japan), and probed with antibodies against Ub (P4D1) (1:1000; Santa Cruz Biotechnology, Dallas, TX, USA), or β-actin (1:1,000; American Research Products, Waltham, MA, USA). Membranes were subsequently probed with horseradish peroxidase-conjugating (HRP) secondary antibodies (1:10000; GE Healthcare, Tokyo, Japan), and protein detected by enhanced chemiluminescence using ImmunoStar® Zeta (Wako Pure Chemical Industries). Chemiluminescent images were obtained using the Image Quant LAS 500 (GE Healthcare) device.
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