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5 protocols using galcer

1

Evaluating Colostrum mAb Reactivity

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To confirm the reactivity of colostrum mAbs to commensal bacteria WCL and C.1086 gp120 Env, SPR binding assays were performed on a Biacore 4000 (GE Healthcare) maintained at 25°C as described30 . Briefly, the colostrum mAbs were immobilized on a Series S CM5 sensor chip to 5,000 to 6,000 response units (RU) using standard amine coupling chemistry. Uninfected human stool bacterial WCL, 1086Cgp120 or C.1086V1/V2 protein was injected over the immobilized colostrum mAbs. Injection time was 150s and the dissociation activity was monitored for an additional 100s. The maximal RU of binding at 150s was reported. The dissociation constant (kd) was calculated using a 1:1 Langmuir model from 160s to 250s. For bacterial WCL, avidity scores were calculated using the formula, RU/kd. All data analysis was performed using the BIAevaluation 4.1 analysis software. (GE Healthcare).
The lipids, Lyophilized powder of D-galactosyl-β-1,1' N-octanoyl-D-erythro-sphingosine (Galcer) and chloroform stock of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), were purchased from Avanti Polar Lipids (Alabaster, AL).The Galcer liposomes were prepared at a 1:1 Galcer:POPC molar ratio and used in the Galcer blocking assay as detailed20 (link).
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2

Evaluating Colostrum mAb Reactivity

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To confirm the reactivity of colostrum mAbs to commensal bacteria WCL and C.1086 gp120 Env, SPR binding assays were performed on a Biacore 4000 (GE Healthcare) maintained at 25°C as described30 . Briefly, the colostrum mAbs were immobilized on a Series S CM5 sensor chip to 5,000 to 6,000 response units (RU) using standard amine coupling chemistry. Uninfected human stool bacterial WCL, 1086Cgp120 or C.1086V1/V2 protein was injected over the immobilized colostrum mAbs. Injection time was 150s and the dissociation activity was monitored for an additional 100s. The maximal RU of binding at 150s was reported. The dissociation constant (kd) was calculated using a 1:1 Langmuir model from 160s to 250s. For bacterial WCL, avidity scores were calculated using the formula, RU/kd. All data analysis was performed using the BIAevaluation 4.1 analysis software. (GE Healthcare).
The lipids, Lyophilized powder of D-galactosyl-β-1,1' N-octanoyl-D-erythro-sphingosine (Galcer) and chloroform stock of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), were purchased from Avanti Polar Lipids (Alabaster, AL).The Galcer liposomes were prepared at a 1:1 Galcer:POPC molar ratio and used in the Galcer blocking assay as detailed20 (link).
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Preparation of Lipid Tubules from GalCer

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D-galactosyl-β-1,1′N-nervonoyl-D-erythro-sphingosine (GalCer) was purchased from Avanti Polar Lipids, Inc. Lipid tubules were prepared by adding GalCer at 50 vol% to 2 mg/ml stock lipid mixture (55 mol% DOPC, 35 mol% DOPS and 10 mol% cholesterol). Chloroform in the mixture was dried under argon and rehydrated in MSB to a final concentration of ~0.8 mg/ml by vortexing for 1 minute. The quality of tubules formed was assessed by TEM and stored at 4°C for no longer than one week.
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4

Investigating UGT8 and Sox10 in Cancer

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UTG8 shRNA was purchased from MISSION shRNA at Sigma-Aldrich. Human UGT8 and Sox10 were amplified from a MDA-MB231 cDNA library and subcloned into pLVX-Puro.
Sulfatide and GalCer were purchased from Avanti Polar Lipids and Abcam, respectively. Antibody against UGT8 was from Protein Tech Group. Antibodies against Sox10, Smad4, Smad5, Integrin αV, and Integrin αVβ5 were from Abcam. Antibodies against RelA and Phospho-Smad1 (Ser463/465)/Smad5 (Ser463/465)/Smad9 (Ser465/467) were from Santa Cruz and Cell Signaling Technology, respectively. Antibodies for galactocerebroside, Sulfatide, and Integrin αVβ3 were purchased from Millipore Sigma. Antibodies for ID4 and β-actin were from BioCheck and Sigma-Aldrich, respectively.
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5

Glycosphingolipid Analysis by LC-MS/MS

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Rat anti-mouse CD68 monoclonal antibody (MCA 1957) was from AbD Serotec (Raleigh, NC). Biotinylated rabbit anti-rat immunoglobulin G (IgG) (H + L) (BA-4001) was from Vector Laboratories, Inc. (Burlingame, CA). DISCOVERY Antibody diluent (760-108) and DISCOVERY DAB Map Detection Kit (RUO) (760-124) were from Ventana Medical System (Tucson, AZ). Internal standards of GluCer, GalCer, LacCer, gangliosides GM1, and sulfatide for LC-ESI-MS/MS were from Avanti Polar Lipids, Inc. (Alabaster, AL). sulfatides with C12:0, C16:0, and C24:0 were obtained from Mytreya LLC (Pleasant Gap, PA). Ganglioside GM2 was obtained from Sigma-Aldrich (St. Louis, MO), and ganglioside GM3 from AdipoGen (San Diego, CA). 2,5-Dihydroxybenzoic acid (DHB) and trifluoroacetic acid (TFA) were obtained from Sigma-Aldrich. High-performance liquid chromatography (HPLC)-grade methanol (MeOH), ethanol (EtOH), and water were obtained from Fisher Scientific (Waltham, MA). Indium tin oxide (ITO) slides were purchased from Bruker Daltonics (Billerica, MA) for MALDI IMS experiments. Additional GSL standards were purchased from Avanti Polar Lipids.
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