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Gaspak ez anaerobe container system sachets

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The BD GasPak EZ Anaerobe Container System Sachets are single-use sachets designed to create an anaerobic environment for the cultivation of anaerobic microorganisms. The sachets generate a carbon dioxide-enriched and oxygen-depleted atmosphere within a sealed container to support the growth of anaerobic bacteria.

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7 protocols using gaspak ez anaerobe container system sachets

1

Cultivation of Campylobacter and Probiotics

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Campylobacter jejuni 81-176 is a well-characterized invasive and wild type strain that has been routinely used as a “global model” in studies that characterize C. jejuni virulence and host pathogen interactions (Korlath et al., 1985 (link); Hendrixson and DiRita, 2004 (link); Papp-Szabo et al., 2005 (link); Hofreuter et al., 2006 (link)). In this study, C. jejuni 81-176 was routinely cultured using Mueller-Hinton (MH) agar (Difco) with a Campylobacter selective supplement (CSS) (SR0117; Oxoid) at 42°C under microaerobic conditions (5% O2, 10% CO2, and 85% N2) (Kassem et al., 2012 (link)). E. coli strain Nissle 1917 (EcN) was cultured aerobically using Luria-Bertani (LB) broth at 37°C to achieve logarithmic growth. Other bacterial strains, Lactobacillus rhamnosus GG (LGG; ATCC 53703), Lactobacillus acidophilus NCFM (LA; ATCC 700396), and Bifidobacterium animalis subsp. Lactis (Bb-12; Christian Hansen, Ltd, Hørsholm, Denmark) were cultured using MRS (de Man, Rogosa and Sharpe) media under anaerobic condition, which was generated using the GasPakTM EZ Anaerobe Container System Sachets (BD, United States) (Kassem et al., 2012 (link)). To facilitate the growth of Bb-12, the MRS broth was supplemented with 0.05% cysteine hydrochloride. LA, LGG, and Bb-12 were grown at 37°C for 18 h (Kumar et al., 2014 (link)).
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2

Gut Microbiome Bacterial Culture Protocol

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We used two commensal facultative anaerobic bacteria (L. brevis, S. bovis) and four obligate anaerobes (B. adolescentis, B. longum, B. thetaiotaomicron, and C. clostridioforme) previously isolated from the gut of healthy pigs (kindly provided by Dr. David Francis, South Dakota State University, Brookings, SD, USA). An additional facultative anaerobe, E. coli G58 (kindly provided by Dr. Carlton Gyles, University of Guelph, Guelph, ON, Canada) was also included in this study. All strains were cultured under aerobic (E. coli G58) and anaerobic conditions (S. bovis, B. thetaiotaomicron, B. adolescentis, L. brevis, C. clostridioforme, B. longum); the latter were generated using the GasPakTM EZ Anaerobe Container System Sachets (BD, Franklin Lakes, NJ, USA). All bacteria were enumerated as described previously [30 (link)]. Selected media and growth conditions for preparing bacterial cultures were reported previously [16 (link)].
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3

Chicken Fecal Microbiome Analysis

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Fresh fecal samples from 20 chickens randomly picked were subjected to culture recovery from D20. Fecal microbiota was recovered on Columbia Blood Agar base (CBA, Becton Dickinson and Company, Franklin Lakes, NJ, United States) supplemented with 5% defibrinated sheep blood (Fisher Scientific, Hampton, NH, United States) and 100 μg/mL cycloheximide (Sigma-Aldrich). CBA plates supplemented with 32 μg/mL of ampicillin sodium (Life Technologies, Grand Island, NY, United States) were used to recover Ampr bacteria. The dry mass of chicken feces was spun down by centrifugation at 4°C at full speed (Eppendorf 5415R, Germany) and homogenized in stomacher bags by a stomacher (Seward Stomacher 80 Lab System, United Kingdom). Homogenized samples were serially diluted in sterile saline and plated on corresponding agar plates. The plates were incubated at 37°C for 48 h in a GasPak 150 anaerobic system with GasPak EZ anaerobe container system sachets (Becton Dickinson and Company). The upper and lower detection limits of the plate counting enumeration method are 1010 CFU/g and 102 CFU/g, respectively.
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4

Hypoxia-induced molecular changes

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Hypoxic environment was achieved using BD GasPak EZ Gas Generating Container Systems and GasPak EZ Anaerobe Container System Sachets (Becton Dickinson and Co., Cockeysville, MD., USA). This system produces an anaerobic atmosphere within 2.5 h with less than 1.0% oxygen. PMCL were harvested after being exposed to 1, 4, and 8 h of hypoxia, and pellets of these cells were prepared for quantitative real-time polymerase chain reaction (qRT-PCR) studies and immunohistochemical analyses.
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5

Selective Cultivation of Vancomycin-Resistant Lactobacillus rhamnosus

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Lactobacillus-specific culture media (modified-rhamnose-2,3,5-triphenyltetrazolium (TTC) chloride-LBS-vancomycin agar; M-RTLV-agar) was adapted from Sakai et al. (2010 (link)), which facilitates the selective growth and visualization of vancomycin resistant L. rhamnosus colony forming units (CFU). M-RTLV agar was prepared by combining L-rhamnose (0.4 g/mL), TTC (30.0 mg/mL), vancomycin (10.0 mg/mL) and metronidazole (10.0 mg/mL) with nutrient agar.
Fecal samples were homogenized (0.2 g of each sample in 2.0 mL phosphate buffered saline) and subsequently diluted in phosphate buffered saline (1:5000) and plated on M-RTLV-agar. Plated samples were incubated at 37°C; Lactobacillus rhamnosus anerobic bacteria were incubated in anerobic conditions created by a BD GasPak EZ Anaerobe Container System Sachets and placing the indicator inside a BD GasPak EZ Large Incubation Container (33.35 cm × 16.51 cm × 17.145 cm). After 48 h of incubation, the CFUs were counted using a cell counter (Scienceware Electronic Colony Counter) and dilution corrected averages were then calculated and analyzed. Based on color and shape, Lactobacillus rhamnosus colonies were isolated, sequenced by GeneWiz and verified in the SILVA data base.
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6

Isolation and Identification of Clostridium perfringens

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All samples were diluted in 1:10 phosphate-buffered saline and placed in a water bath for 10 minutes at 80°C to kill the non spore-forming bacteria. The processed samples were sub-cultured in cooked meat broth media (Oxoid, Cambridge, UK) for 24 hours under strict anaerobic conditions for enrichment of CP. After that, these inoculated broth tubes were directly streaked onto sterile freshly prepared blood agar plates (nutrient agar; Oxoid, UK that were supplemented with 5% sterile defibrinated sheep blood and Neomycin sulfate in a concentration of 200 μg/ml). All cultivated blood agar plates were then incubated in anaerobic jars at 37°C for 24 hours using anaerobe sachets (BD GasPak™ EZ Anaerobe Container System Sachets) to produce the strict conditions of anaerobiosis, which must be provided for vitality and viability of CP. Further identification tests for the recovered CP isolates including colony morphology, Gram staining, and biochemical tests (catalase, sugar fermentation, and gelatin liquefaction) were performed. In addition, the lecithinase and lipase activities of these recovered CP isolates on egg yolk agar medium were also examined. In addition, for toxinotyping of the recovered CP isolates, a toxin-antitoxin neutralization test was performed and interpreted according to Quinn et al. (2002) .
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7

Anaerobic Nematode Survival Assay

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Nematodes were grown in anaerobic chambers. We seeded NGM plates with synchronized C. elegans or H. mephisto L1 larvae from overnight hatching in M9 (at 20°C for C. elegans and 37°C for H. mephisto), allowing a few minutes to dry, and then placing the plates into 2L chambers (Cat # 260002) with BD GasPak EZ anaerobe container system sachets (Cat # 260678) to create an anaerobic environment. Nematodes were cultured at either 20°C or 37°C depending on the species in standard incubators, for the indicated time (2 or 9 days) before opening and measuring viability. Survival was counted by washing the worms off the plates and exposing them to Sytox Orange dye (Thermo Fisher Cat # S11368), diluted 1:1000 in M9, for 15 minutes. Worms were then collected by centrifugation (400g for 2 minutes), pipetted onto 2% agarose-M9 pads, coverslipped, and sealed with clear nail polish prior to measurement of the dead animals using an Olympus BX61 fluorescence microscope set to the TRITC channel. Worm lengths (live animals only) were measured at the same time using CellSense v. 2.3 software.
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