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5 protocols using spe confocal microscope

1

Live Cell Imaging with Microscopy

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Live imaging was performed using an incubator to maintain cultures at 37°C and 5% CO2 (Okolab) and × 20 0.3 NA PL Fluo dry objective. Epi-fluorescence images were acquired using a Nikon Ti microscope equipped with a CoolSNAP HQ2 camera (Roper Scientific), an XY-motorized stage (Nikon), driven by Metamorph (Molecular Devices). Confocal images were acquired using Leica SPE confocal microscope with a 63x 1.3 NA Apo objective or Zeiss LSM 710 and Zeiss LSM 880 with a 63x 1.4 NA Plan-Apochromat objective. 3D-time-lapse spinning disk microscopy was performed using a Zeiss Cell Observer Spinning Disk system equipped with Z-piezo (Prior), Spinning Disk CSU-X1M 5000 (Yokogawa), 488nm 561nm and 638nm excitation laser, an incubator to maintain cultures at 37°C and 5% CO2 (Pekon), EM-CCD camera Evolve 512 (Photometrics) and a 63x 1.4 NA Plan-Apochromat objective. Fiji was used as an imaging processing software and Adobe illustrator was used to raise figures.
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2

Live Cell Imaging with Microscopy

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Live imaging was performed using an incubator to maintain cultures at 37°C and 5% CO2 (Okolab) and × 20 0.3 NA PL Fluo dry objective. Epi-fluorescence images were acquired using a Nikon Ti microscope equipped with a CoolSNAP HQ2 camera (Roper Scientific), an XY-motorized stage (Nikon), driven by Metamorph (Molecular Devices). Confocal images were acquired using Leica SPE confocal microscope with a 63x 1.3 NA Apo objective or Zeiss LSM 710 and Zeiss LSM 880 with a 63x 1.4 NA Plan-Apochromat objective. 3D-time-lapse spinning disk microscopy was performed using a Zeiss Cell Observer Spinning Disk system equipped with Z-piezo (Prior), Spinning Disk CSU-X1M 5000 (Yokogawa), 488nm 561nm and 638nm excitation laser, an incubator to maintain cultures at 37°C and 5% CO2 (Pekon), EM-CCD camera Evolve 512 (Photometrics) and a 63x 1.4 NA Plan-Apochromat objective. Fiji was used as an imaging processing software and Adobe illustrator was used to raise figures.
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3

Confocal and Airyscan Microscopy Protocol

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Images of fixed nota were acquired with a Leica SPE confocal microscope and a Zeiss Airyscan microscope (LSM 880 with AiryScan module). Live imaging of NiGFP with Par3::Scarlet was performed with a Leica SPE confocal microscope. Live imaging of NiGFP in wild-type SOP and in strat SOP expressing pnr-GAL4>AP-47dsRNA (Fig. S2) was performed with a Zeiss Airyscan microscope (LSM 880 with AiryScan module). All images were processed and assembled using ImageJ 1.48 and Adobe Illustrator.
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4

Immunofluorescence Staining of Cells and Tissues

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Cultured cells on coverslips were fixed with 1% or 4% PFA/PBS for 10 min at 22°C and used immediately or stored in PBS at 4°C. Tissue was fixed in 4% PFA/PBS for 10 min at 22°C and equilibrated in 30% sucrose overnight at 4°C. Tissue was embedded in O.C.T. (TissueTek) and stored at –80°C. Sections were cut at 10 μm using a Leica CM3050S cryostat and stored at –80°C. Fixed cells or tissue sections were incubated with primary antibodies overnight at 4°C. Primary antibodies were mouse anti-DDK/FLAG, mouse anti-HSP60, rabbit anti-TH, and rat anti-CD31, all used at 1:500. For kidney sections, fluorescein-labeled Lotus tetragonolobus lectin (LTL) was added during the primary antibody treatment. Incubation with secondary antibodies (1:250) conjugated to either Alexa Fluor 488, Alexa Fluor 555 (Life Technologies), or Cy3 (Jackson ImmunoResearch) was 45 min at 22°C. Samples were then incubated with DAPI (1 ng/ml, Life Technologies) for 5 min at 22°C and mounted in Mowiol 4-88 (Polysciences) with DABCO (25 mg/ml, Sigma-Aldrich). Samples were imaged using a Leica SPE confocal microscope for cell culture and a Zeiss Axio Observer D1 widefield inverted microscope for tissue sections. Quantification of TH-positive cells was performed on 1/3 of the total CB using 1 of 3 sets of adjacent sections (Figure 1G–I).
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5

Confocal and Airyscan Imaging of Cellular Processes

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Images of fixed nota were acquired with a Leica SPE confocal microscope and a Zeiss Airyscan microscope (LSM 880 with AiryScan module). Live imaging of NiGFP with Par3::Scarlet was performed with a Leica SPE confocal microscope. Live imaging of NiGFP in wild-type SOP and in strat SOP expressing pnr-GAL4>AP-47 dsRNA (Fig. S2) was performed with a Zeiss Airyscan microscope (LSM 880 with AiryScan module). All images were processed and assembled using ImageJ 1.48 and Adobe Illustrator.
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