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10 protocols using cd147

1

Evaluating CD147 Binding Affinity of APN and SAPN

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To measure the in vitro affinity of APN and SAPN to CD147, bEnd.3 cells were seeded on the coverslips in a 24-well plate. When the cells formed confluent monolayers, the previous medium was removed, and they were washed thrice with PBS and then incubated with serum-free medium containing Rhodamine-labeled APN or SAPN (10 nM) for 1 h. After that, cells were washed twice with PBS, fixed with 2% PFA in PBS solution, immunostained for CD147 (1:200, Abcam), and visualized by fluorescence microscopy.
To test the in vivo affinity of APN and SAPN to CD147, both normal mice and tMCAO mice were injected with Rhodamine-labeled APN or SAPN solution (corresponding to AP9 of 2.5 mg/kg body weight, and rhodamine of 15 μmol/kg body weight) at 1 h after tMCAO onset. After transcardial perfusion with cold PBS (pH 7.4) under deep anesthesia at 4 h after induction of tMCAO, brains were immediately removed, fixed in 4% paraformaldehyde overnight, rinsed several times in PBS, then stored in 30% sucrose at 4 °C until the brains sank. Brains were embedded in optimal cutting temperature compound (OCT compound) prior to frozen sectioning to 6 μm thick coronal sections. Sections were further immunostained for CD147 (1:200; Abcam) as we described previously.12 (link)
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2

Immunofluorescence and IHC Antibody Protocols

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Antibodies- CD44 (Santa Cruz Biotechnology sc-18849), Vimentin (Abcam ab16700) and CD147 (Abcam ab108317). Secondary antibodies for confocal microscopy and flow cytometry- Goat anti-Rabbit IgG (H+L) Secondary Antibody, Alexa Fluor® 488 conjugate (ThermoFischer Scientific A-11034) and Goat anti rat (Santa Cruz Biotechnology sc-2011). Image IT Fx Signal Enhancer (R37107), ProLong Gold Antifade Mount (P10144), 4’, 6-diamidino-2-phenylindoleg (DAPI) were obtained from Thermo Fischer Scientific. IHC- all IHC reagents, except primary antibodies and 61–9520 are from Biocare Medical (biocare.net). 61–9520 is from Fisher Scientific (thermofisher.com)
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3

Characterizing Cell Surface Antigens

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Western blots and flow cytometry assay were performed according to standard protocols. Monocytes from normal blood, monocyte from leukemia and nucleated erythrocytes from leukemia were collected to identify their specific surface antigen.
Western blotting was performed according to the routine procedure. Briefly, cells were lysed in RIPA buffer with protease/phosphatase inhibitors. After protein quantification, lysates were resuspended in sample buffer and loaded on the gradient gels (Criterion Tris-HCl Gel, 8-16%). Proteins were transferred onto polyvinyl difluoride (PVDF) membranes. Primary antibody CD147 (Abcam, Ab108317) was used. Blots were incubated with the HRP-conjugated secondary antibody (Boster, BA1054) and developed using Epson V300 scanner. Alpha Innotech software was used to analyze the gray value.
For flow cytometry, cell samples were incubated with combination antibody FITC-labelled anti-CD147 (BD Biosciences, #4192771) at room temperature (RT) for 2 h in the dark. Cells were then centrifuged, resuspended in PBS, and loaded into a FACS Aria flow cytometer. Data were analyzed by FlowJo (Tree Star) software.
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4

Western Blot Analysis of Adipose Protein

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Total proteins were extracted from adipose tissue samples using a mixture of RIPA lysis buffer (Cell Signaling) and protease and phosphatase inhibitors (Sigma-Aldrich, Burlington, MA, USA). Proteins were quantified using BCA Protein Assays (Thermo Fisher Scientific). Total protein (10 µg) was gel electrophoresed and transferred to polyvinylidene fluoride (PVDF) membranes. PVDF membranes were then incubated overnight at 4 °C with the primary mouse monoclonal antibodies (CD147, MGAT3, MGAT4a, MGAT5, and loading control GAPDH; Abcam, Waltham, MA, USA), and then with infrared IRDye-labeled secondary antibodies (LI-COR Biosciences, Lincoln, NE, USA). Lastly, membranes were scanned with an infrared imaging system (Odyssey Clx; LI-COR Biosciences). The target protein band intensity was assessed relative to the loading control using Image Studio (LI-COR Biosciences).
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5

Western Blot Analysis of Cellular Proteins

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Proteins from cell lysates were denatured in SDS and separated with 10% SDS–PAGE before being transferred onto PVDF membranes (Millipore, USA). Nonspecific binding was blocked using 5% nonfat milk in TBST (10 mM Tris–HCl, 150 mM NaCl, 0.05% Tween 20, pH 7.5) for 1 h at room temperature. The membranes were incubated with specific antibodies against β-actin (diluted at 1:1,000, Santa Cruz, CA, USA), CD147 (diluted at 1:1,000, Abcam, Cambridge, UK), STAT1, STAT3, phospho-STAT1, and phospho-STAT3 (diluted at 1:1,000, Cell Signaling Technology, MA, USA) overnight. The membranes were washed with TBST and then incubated with a secondary HRP-conjugated goat anti-mouse or anti-rabbit IgG antibody (diluted at 1:5,000, Santa Cruz, CA, USA).
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6

Investigating Icariin and CD147 Modulation

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The two drugs used in this study were icariin (Sigma-Aldrich, St. Louis, MO, USA) and CD147 protein (Sino Biological Inc., Beijing, China).
The reagents used were RNA extraction and polymerase chain reaction (PCR) primers and reagents (Invitrogen Inc., Carlsbad, CA, USA), TUNEL antibody (Abcam Inc., Cambridge, MA, USA), Bax, Bcl-2, active caspase-3, collagen types I/III (Col I/III), CD147, MMP-9, tissue inhibitor of metalloproteinase 1 (TIMP-1), β-actin and other antibodies (Abcam Inc.), bicinchoninic acid, and quantitative western blot reagent.
Finally, the instruments used were a VEVO2100 small animal ultrasound imaging system (VisualSonics Inc., Toronto, Canada), P3 Plus multi-channel polygraph (Ponemah Physiology Platform, Valley View, OH, USA), microscope (Olympus Optical Co., Ltd., Tokyo, Japan), microplate reader (BioTek Instruments, Inc., Winooski, VT, USA), PCR instrument (Thermo Fisher Scientific, San Jose, CA, USA), low-speed centrifuge (Beckman Coulter, Fullerton, CA, USA), and Gel Doc XR+ imaging system (Bio-Rad Laboratories, Hercules, CA, USA).
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7

Western Blot Analysis of CD147 Expression

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SAS, HSC-3 and FaDu cell lines were lysed in detergent containing 1% NP-40, 0.1 mM phenylmethylsulfonyl fluoride, 1 mg/ml leupeptin and 1 mg/ml aprotinin, and protein levels were determined using the Bio-Rad protein assay method (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Total protein (40 µg) was separated on 8% SDS-PAGE gels and transferred to nitrocellulose membranes using the semi-dry transfer machine (Bio-Rad Laboratories, Inc.). Membranes were blocked with 5% skimmed milk/TBS with Tween-20 (TBS-T) solution for 2 h at room temperature, and incubated with primary antibodies including against β-actin (dilution 1:1,000, cat. no. ab8227; Abcam, Cambridge, UK) and CD147 (rabbit anti-human polyclonal, dilution 1:1,000, cat. no. sc-13976; Santa Cruz Biotechnology, Inc.), in 5% skimmed milk/TBS-T overnight at 4°C. Subsequent to washing with TBS-T three times, membranes were incubated for 1 h at room temperature with a goat anti-rabbit horseradish peroxidase-conjugated secondary antibody (dilution 1:3,000, cat. no. 170-6515; Bio-Rad Laboratories, Inc.). The filters were rinsed with TBS-T three times, and the blot was developed using Luminol reagent (Santa Cruz Biotechnology Inc., Dallas, TX, USA) by autoradiography.
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8

Placental Immunohistochemical Analysis of SARS-CoV-2

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The placenta samples were collected and sent to the Pathology Lab for optimal formalin fixation and histological analysis. One formalin-fixed paraffin-embedded block of placental parenchyma was selected from each case to perform immunohistochemical analyses. After macroscopic examination of the cut surfaces, multiple representative sections of the parenchyma were sampled for histology.
Placenta slides were deparaffined with xylene and rehydrated at decreasing ethanol concentrations. Heat antigen retrieval in Citrate Buffer Ph6 and Ph9, depending on the marker datasheet information, was performed. Slides were stained with the following antibodies, purchased from Abcam: SARS-CoV-2 SPIKE glycoprotein (Cat# ab272504, polyclonal, dilution 1:100), ACE2 (Cat# ab108252, clone EPR4435-2, dilution 1:250), CD147 (Cat# ab666, clone MEM-M6/1, dilution 1:100), CD34 (Cat# ab110643, clone EPR2999, dilution 1:250), and VEGF-A (Cat# ab1316, clone VG-1, 5 µg/ml concentration). LC3B antibody was purchased from Novus Biologicals (Cat# NB100-2220, polyclonal, dilution 1:250). Slides were counterstained with hematoxylin-eosin (H-E) and were imaged with Nikon Eclipse E100 microscope at different magnifications (10 or 20x). The tissues were scored based on number of positively stained cells/mm2 and the staining on selected areas was detected using ImageJ (64-bit Java 8) software.
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9

CD147 and HSP60 Immunohistochemistry

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Briefly, slides were baked at 65 °C overnight and then dewaxed with Xylene, rehydrated with ethanol gradients and treated with 3% hydrogen peroxide solution for 10 min to inhibit endogenous peroxidase (PO). The slides was immersed in fresh citrate buffer and pressure cooked for 3 min to achieve antigen retrieval. Slides were then incubated with CD147 (1:150, Abcam, USA) and HSP60 (1:300, Santa Cruz, USA) at 4 °C in a wet box overnight. The slides were brought to room temperature (RT) for 30 min on the next day, incubated with universal secondary antibody (anti-mouth/rabbit, 1:200, Zhongshan Company, Beijing, China) for 1 h. Slides were treated with DAB (1:100, Zhongshan Company, Beijing, China) 15 s and then stained with Hematoxylin.
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10

Western Blot Analysis of pBEC Proteins

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pBECs were lysed in RIPA buffer, and all proteins were standardized to 5 μg and were resolved by SDS-PAGE, and transferred onto nitrocellulose membranes for detection of CD147, histone deacetylase (HDAC) 4, MMP-9, c-Myc and SP1 (Abcam, UK), in cell lysates. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was detected as a loading control for proteins in cell lysates [12 (link), 13 (link)]. Protein estimation was determined by densitometry, using Image lab software (version 4.1), and values were expressed as protein/GAPDH ratio and normalized to media controls at baseline from pBEC of non-asthmatics. All antibodies used in this study are commercially available and have been validated by the source company.
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