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8 protocols using ab463

1

Cardiac Lipid Metabolism and Angiogenesis

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We analysed the expression of cardiac lipid metabolism proteins by the Western blot method as previously described in detail.28 As severe LV hypertrophy is related to the impaired angiogenesis pathway, we also studied the expression of key proteins that regulate angiogenesis and signal hypoxia. Primary antibodies: HIF1α (ab463, Abcam; 1:500); fatty acid transporter (CD36; ab133625, Abcam; 1:1000); carnitine palmitoyltransferase 1 (CPT1; NBP1‐59576, Novus Biological; 1:1000); fatty acid‐binding protein (FABP3; ab133585, Abcam; 1:1000); acyl‐CoA dehydrogenase (ACADL; ab196655, Abcam; 1:3000); medium‐chain acyl‐CoA dehydrogenase (MCAD; ab110296, Abcam; 1:1000); 2,4‐dienoyl‐CoA reductase (DECR1; ab198848, Abcam; 1:2000). AMP‐activated protein kinase (AMPK; 2532 s, Cell Signaling; 1:1000); phosphorylated AMPK (Thr 172) (pAMPK; 2535 s, Cell Signaling; 1:500); SIRT1 (8469 s, Cell Signaling; 1:1000); PPARα (ab8934, Abcam; 1:1000); retinoid X receptor (RXRα; 3085 s, Cell; 1:1000); peroxisome proliferator‐activated receptor gamma coactivator 1α (PGC1α; 20,658‐1‐AP, Proteintech; 1:1000). Targeted bands were normalized to the expression of cardiac GAPDH (sc‐32,233, Santa Cruz Biotechnology; 1:2000).
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2

Immunohistochemical Analysis of Tumor and Spleen

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Tumor and spleen tissues were fixed in 10% (v/v) neutral-buffered formalin and embedded in paraffin wax. For immunohistochemical studies, 3 μm sections were cut from each specimen and mounted on CITOGLAS® adhesion microscope slides (CITOTEST, Jiangsu, China). The tumor sections were incubated overnight with primary antibodies specific for Ki-67 (ZM-0166, ZSGB-BIO, China, 1:100), CA IX (ab38898, Abcam, USA, 1:900), and HIF-1a (ab463, Abcam, USA, 1:500); the spleen tissues were stained with NKp46 (bs-2417R, Bioss, China, 1:400), CD11c (bs-2508R, Bioss, China, 1: 200), CD11b (bs-1014R, Bioss, China, 1:200), and Ly-6G (bs-2576R, Bioss, China, 1:400). The biotinylated secondary antibody was goat anti-mouse or anti-rabbit antibody IgG (ZSGB-BIO, China). Antibody binding was detected with 3, 3’ -diaminobenzidine tetrahydrochloride (DAB kit, ZSGB-BIO, China). After a final washing in distilled water, the sections were counterstained with haematoxylin, dehydrated, cleared and mounted. Images were captured with a digital microscope and analyzed by Image-pro-plus software.
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Comprehensive Analysis of Bone Regeneration

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One part of the fixed craniums was dehydrated through a graded alcohol series and then embedded in polymethylmethacrylate (PMMA). After hardening, the sagittal sections of the central segment were cut into 150- to 200-μm-thick slices using a microtome (Leica, Germany), then glued onto a plastic support and polished to a final thickness of approximately 40 μm. First, a confocal laser scanning microscope (CLSM) (Leica, Germany) was used to observe the fluorescent labeling of the sections using excitation/emission wavelengths for chelating fluorochromes of 405/580 nm (tetracycline, yellow), 543/617 nm (alizarin red, red), and 488/517 nm (calcein, green), respectively. The sections were then stained with van Gieson's picrofuchsin to assess new bone formation (the red and black colors indicated new bone and β-TCP, respectively). The other part of the craniums was decalcified for two to three weeks in 10% EDTA solution, dehydrated with gradient alcohols, embedded in paraffin, and sectioned into 4-mm-thick sections. The CD31 (ab64543, 1:200; Abcam, UK), VEGF (ab46154, 1:100; Abcam, UK) and HIF-1α (ab463, 1:200; Abcam, UK) were used for the detection of newly formed vessels in new bone formation.
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Western Blot Analysis of Cardiac Proteins

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Cardiac muscle (25–50 mg) was homogenized as previously reported [22 (link)] and 5μg of homogenate loaded for SDS-PAGE. Proteins were separated on a 6%, 7.5%, 10% or 12% resolving gel as required to optimize for MW separation, and transferred to polyvinylidene difluoride membrane (Roche, Laval, QC, CA). The following commercially available antibodies were used: total OXPHOS antibody cocktail (Abcam, Cambridge, MA, USA, ab110413, 1:500,), eNOS (Abcam, ab5589, 1:1000), VEGF (Abcam, ab46154, 1:1000), HIF1α (Abcam, ab463, 1:1000), alpha tubulin (Abcam, ab40742, 1:5000), muscle RING finger protein-1 (MuRF1; Santa Cruz Biotechnology, Dallas, TX, USA, sc-32920, 1:500), Muscle atrophy F-box (MAFbx; Santa Cruz, sc33782, 1:500), forkhead transcription factor-3a, Serine residue 253 (FOXO3a Ser253; Abcam, ab47285, 1:500), atrial natriuretic peptide (ANP; Abcam, ab180649, 1:500), BNP (Abcam, ab19645, 1:500) and beta-myosin heavy chain (β-MHC; Abcam, ab172967, 1:2000). All samples were detected from the same Western blot by cutting gels and transferring onto a single membrane to limit variability. Equal loading of protein was verified using Ponceau staining as well as constant alpha tubulin. All blots were quantified using enhanced chemiluminescence (Perkin Elmer, Woodbridge, ON, CA) and quantified by densitometry (Alpha Innotech Fluorchem HD2, Fisher Scientific, Ottawa, ON, CA).
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5

Protein Expression Analysis of Tumor Tissues

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Tumor tissues were dissected and stored at -80°C. The frozen tumor tissues were lysed with ice-cold RIPA Lysis Buffer (P0013B, Beyotime, China) for 30 minutes on ice then homogenized with a tissue homogenizer. The lysates were centrifuged at 12,000 rpm for 20 minutes at 4°C, and the protein concentration was determined by BCA Protein Assay (Beyotime, China). Equivalent samples (20 μg protein per lane) were subjected to SDS-PAGE on 10% gel. The proteins were then transferred onto polyvinylidene fluoride (PVDF) membranes (IPVH000 10, MercKMillipore), and incubated with primary antibodies against CA IX (ab38898, Abcam, USA, 1:1500), HIF-1a (ab463, Abcam, USA, 1:500) and a-tubulin (as internal reference, sc-80350, Santa Cruz, USA, 1:500) overnight at 4°C. Then membranes were incubated with anti-mouse or anti-rabbit secondary antibody for 1 hour at RT. Primary antibody was visualized by binding horseradish peroxidase (HRP)-conjugated secondary antibody with an Electro-Chemi-Luminescence (ECL) plus kit (Thermo).
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6

Immunohistochemical Analysis of HIF-1α and VEGF

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Tissue were harvested and fixed with 4% formalin in PBS at 4°C for 24 h. The fixed samples were dehydrated, embedded with paraffin, and cut into 5-μm-thick sections. The sections were rehydrated, blocked with 5% goat serum, and incubated overnight at 4°C with the primary antibody of mouse anti-HIF-1α monoclonal antibody and rabbit anti-VEGF polyclonal antibody (1:200, Abcam, Hong Kong, ab463 and ab53465). The sections were then incubated with the secondary antibody. The labeled samples were then counterstained with 3–3'-diaminobenzidine.
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7

Quantitative Protein Analysis in EC Cells

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Total protein was extracted from EC cells using buffer containing Halt Protease Inhibitor Cocktail (#87786, #78429, and #78438; Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane, which was blocked with 5% non-fat milk and incubated overnight at 4°C with antibodies against DPPIV (1:400, ab28340), HIF-1α (1:500, ab463), VEGFA (1:400, ab51745) (Abcam) or β-tubulin (1:1000, #2128; Cell Signaling Technology, Danvers, MA, USA). Membranes were then incubated with a peroxidase-conjugated secondary antibody for 2 h at room temperature. Immunoreactivity was visualized by enhanced chemiluminescence using an Alpha Innotech Imaging System (Protein Simple, Santa Clara, CA, USA). Protein band intensity was normalized to the level of β-tubulin. Each experiment was repeated at least three times.
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8

Endometrial Tissue Immunostaining Protocol

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All animal procedures including uterine collections were performed in accordance with the guidelines of the Committee for Experimental Animals at Zennoh Embryo Transfer (ET) Center (Hokkaido, Japan) and the approval was also obtained from the Ethics Committee of the University of Tokyo (IRB number 7A-6-605). Paraffin sections of endometrial tissues were immunostained using antibodies targeting NFIL3, CEBPA and HIF1A, according to a previously described protocol (41 (link)). Briefly, the paraffin sections were rehydrated, boiled for 20 min in 10 mM citrate buffer (pH 6.0), and then incubated with an antibody against NFIL3 (1:100, Sigma-Aldrich, Saint Louis, MO, USA), CEBPA (1:100, ab15047, abcam), or HIF1A (1:100, ab463, abcam) overnight at 4°C. Subsequently, the paraffin sections were incubated with goat anti-rabbit IgG biotin conjugate (1:800 dilution, B8809, Sigma-Aldrich). The immunoreactivity was visualized by means of avidin-peroxidase (Sigma-Aldrich) and AEC substrate kit (Invitrogen) according to the manufacturer’s instructions.
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