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Luna nh2 column

Manufactured by Phenomenex
Sourced in United States, Japan

The Luna NH2 column is a high-performance liquid chromatography (HPLC) column designed for the separation and analysis of various compounds. It features an aminopropyl (NH2) bonded stationary phase that provides excellent selectivity for polar and moderately polar analytes. The column is suitable for a wide range of applications, including the analysis of carbohydrates, amino acids, and other polar compounds.

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35 protocols using luna nh2 column

1

Metabolite and Lipid Profiling of Rice

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Soluble sugars were extracted by shaking vigorously in 80% (v/v) ethanol twice after grinding grain endosperm, and the samples were centrifuged at 12 000 g for 15 min. The supernatant was added chloroform (v/v) for removing the pigment, the solution was centrifuged, and the supernatant was collected. Cell extracts were analysed by ultrahigh‐performance liquid chromatography (Acquity, Waters) coupled to a Q Exactive hybrid quadrupole–orbitrap mass spectrometer (Thermo Fisher Scientific). The injection volume was 10 μL. Metabolites were separated with a Luna NH2 column (100 mm × 2 mm, 3 μm particle size, Phenomenex). The LC‐MS data were analysed as described previously (Zhang et al., 2018b). Lipids were extracted from dehulled rice seeds and analysed by liquid chromatography–electrospray ionization mass spectrometry (LC‐SI‐MS). Polar lipids were analysed using an Exion UPLC system coupled with a triple quadrupole/ion trap mass spectrometer (6500 Plus Qtrap; SCIEX). MRM transitions were set up for comparative analysis of various polar lipids (Lim et al., 2014). Lipid species in each class were quantified by referencing to spiked internal standards corrected by response factor determined by two standards of same class as described previously (Lu et al., 2018).
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2

Metabolite Profiling of Cell Culture Media

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10 μL of extracted cultured media were separated using a
150 × 2.0 mm Luna NH2 column (Phenomenex); mobile phase A: 20mM
ammonium acetate, 20mM ammonium hydroxide in water; mobile phase B: l0mM
ammonium hydroxide in 10% water/22.5% methanol/67.5% acetonitrile. The
column was eluted isocratically with a linear gradient from 100% to 0%
mobile phase B over 10 minutes, then 2 minutes at 0% mobile phase B. MS
data were acquired with multiple reaction monitoring in the negative ion
mode on a TSQ Quantiva triple quadrupole MS (Thermo Fisher Scientific).
Raw data were integrated and visually inspected using TraceFinder 2.1
software (Thermo Fisher Scientific). MRM transitions were as follows:
pyruvate (87/43), lactate (89.1/43.1), lactate-d3 (92.1/45.1).
Metabolite identifications were confirmed using synthetic mixtures of
reference compounds.
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3

Liver Metabolite Profiling by LC-MS

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Supernatants from pulverized liver tissue samples treated with 80:20 methanol:water were dry ice, extracted, and reconstituted in LC/MS grade water and analyzed via reverse-phase ion-pairing chromatography coupled to an Exactive orbitrap mass spectrometer (ThermoFisher Scientific, San Jose, CA) in negative ion mode (Lu et al., 2010 (link)) or analyzed on an Thermo Finnigan TSQ Quantum Ultra triple quadrupole mass spectrometer (Thermo Electron Corp., San Jose, CA) operating in positive ion selected reaction monitoring (SRM) mode, coupled with a Shimadzu LC-10AD HPLC system (Shimadzu, Columbia, MD), on a Luna NH2 column (250 mm × 2 mm, 5 μm particle size; Phenomenex, Torrance, CA) at a basic pH with a running time of 40 min as described previously (Bajad et al., 2006 (link)). The data analyses were performed using MAVEN software as previously described (Melamud et al., 2010 (link)).
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4

Quantification of Hydroxyproline in Wound Tissue

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The amount of free hydroxyproline was quantified using tandem mass spectrometry (LC-MS/MS) in wound tissues similar to our recent rat study [20 (link)]. Metabolite extraction was performed with a modified Bligh Dyer method [21 (link)]. Extracted metabolites from the aqueous phase were dried in a CentriVap Concentrator (Labconco, Kansas city, MO, USA) and then stored at -80°C until analysis. Protein pellets were used to normalize extracted metabolite quantity by using a bicinchoninic acid assay (G-Biosciences, St. Louis. MO, USA). A hydroxyproline (Sigma-Aldrich, St. Louis, MO, USA) standard curve was obtained by running hydroxyproline solution at 1 × 10−3, 1 × 10−4, 1 × 10−5, 1 × 10−6, 1 × 10−7, 1 × 10−8, 1 × 10−9 M concentrations. For hydroxyproline detection, hydrophilic interaction liquid chromatography was performed on a Micro200 LC (Eksigent, Redwood, CA, USA) with a Luna NH2 column (3 μ, 100Å, 150mm by 1.0mm, Phenomenex, Torrance, CA, USA). Samples were analyzed on a 5600+ TripleTOF Mass Spectrometer (AB SCIEX, Framingham, MA, USA) and (132.10 → 86.09) m/z transition was used for hydroxyproline detection.
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5

LC-MS Analysis of Stool Metabolites

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LC-MS samples were prepared from stool homogenates (30 µL) via protein precipitation with the addition of four volumes of 80% methanol containing inosine-15N4, thymine-d4 and glycocholate-d4 internal standards (Cambridge Isotope Laboratories; Andover, MA). The samples were centrifuged (10 min, 9,000 x g, 4°C) and the supernatants were injected directly onto a 150 x 2.0 mm Luna NH2 column (Phenomenex; Torrance, CA). The column was eluted at a flow rate of 400 µL/min with initial conditions of 10% mobile phase A (20 mM ammonium acetate and 20 mM ammonium hydroxide in water) and 90% mobile phase B (10 mM ammonium hydroxide in 75:25 v/v acetonitrile/methanol) followed by a 10 min linear gradient to 100% mobile phase A. MS analyses were carried out using electrospray ionization in the negative ion mode using full scan analysis over m/z 60-750 at 70,000 resolution and 3 Hz data acquisition rate. Additional MS settings were: ion spray voltage, -3.0 kV; capillary temperature, 350°C; probe heater temperature, 325 °C; sheath gas, 55; auxiliary gas, 10; and S-lens RF level 40.
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6

Quantifying Cellular Cx-SAM Levels

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The cellular concentration of Cx-SAM was quantified with an isotope ratio-based approach (17 (link)), using 15N-labeled isotopic standard of Cx-SAM. The isotopic standard (chemical formula = C16H2215N6O7S, [M+H] = 449.1171) was prepared by methanol extraction of the ligand from the recombinant CmoA, which had been purified from cells grown in M9 media supplemented with 15NH4Cl as the sole nitrogen source, followed by HPLC purification as described previously (14 (link)). Approximately 6 × 1010 wild-type E. coli K-12 cells grown in 10-ml LB media were pelleted by centrifugation. Metabolites were extracted with 1 ml of methanol:acetonitrile:water (40:40:20) with 0.1-mM FA, and 90 nM of an isotopic standard of Cx-SAM. After 20-min incubation on ice, the lysed cells were centrifuged at 16 000g for 20 min at 4°C. The sample was subjected to LC-MS analysis (Agilent 1200 HPLC coupled to LTQ Orbitrap Velos mass spectrometer; ESI positive ion mode detection; Phenomenex Luna NH2 column, bead size of 5mm, pore size of 100 Å, 150 × 2 mm) using a gradient from 75 to 2% of acetonitrile and 0.1% FA over 30 min. The amount of cellular Cx-SAM was quantified by comparing the intensities of chromatographic peaks with those from the isotopic standard, assuming the intracellular volume of E. coli is ∼1 μm3 (19 (link),20 (link)).
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7

Quantitative LC-MS Analysis of Glutathione

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Reduced and oxidized glutathione were profiled in negative ionization mode by liquid chromatography tandem mass spectrometry (LC-MS) methods as described previously38 (link). Data were acquired using an ACQUITY UPLC (Waters Corp, Milford MA) coupled to a 5500 QTRAP triple quadrupole mass spectrometer (AB SCIEX, Framingham MA). Tissue homogenates (30 μL) were extracted using 120 μL of 80% methanol containing 0.05 ng/μL inosine-15N4, 0.05 ng/μL thymine-d4, and 0.1 ng/μL glycocholate-d4 as internal standards (Cambridge Isotope Laboratories, Inc., Tewksbury MA). The samples were centrifuged (10 min, 9,000 × g, 4ºC) and the supernatants (10 μL) were injected directly onto a 150 × 2.0 mm Luna NH2 column (Phenomenex, Torrance CA). The column was eluted at a flow rate of 400 μL/min with initial conditions of 10% mobile phase A (20 mM ammonium acetate and 20 mM ammonium hydroxide (Sigma-Aldrich) in water (VWR)) and 90% mobile phase B (10 mM ammonium hydroxide in 75:25 v/v acetonitrile/methanol (VWR)) followed by a 10 min linear gradient to 100% mobile phase A. The ion spray voltage was −4.5 kV and the source temperature was 500°C. Raw data were processed using MultiQuant 2.1 software (AB SCIEX, Framingham MA) for automated peak integration. LC-MS data were processed and visually inspected using TraceFinder 3.1 software (Thermo Fisher Scientific; Waltham, MA).
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8

Stool Metabolome Analysis by LC-MS

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LC­MS samples were prepared from stool homogenates (30 μL) via protein precipitation with the addition of four volumes of 80% methanol containing inosine­15N4, thymine­d4 and glycocholate­d4 internal standards (Cambridge Isotope Laboratories; Andover, MA). The samples were centrifuged (10 min, 9,000 x g, 4°C) and the supernatants were injected directly onto a 150 × 2.0 mm Luna NH2 column (Phenomenex; Torrance, CA). The column was eluted at a flow rate of 400 μL/min with initial conditions of 10% mobile phase A (20 mM ammonium acetate and 20 mM ammonium hydroxide in water) and 90% mobile phase B (10 mM ammonium hydroxide in 75:25 v/v acetonitrile/methanol) followed by a 10 min linear gradient to 100% mobile phase A. MS analyses were carried out using electrospray ionization in the negative ion mode using full scan analysis over m/z 60­750 at 70,000 resolution and 3 Hz data acquisition rate. Additional MS settings were: ion spray voltage, ­3.0 kV; capillary temperature, 350°C; probe heater temperature, 325 °C; sheath gas, 55; auxiliary gas, 10; and S­lens RF level 40.
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9

Quantification of Hemolymph Amino Acids, Potassium, and Sodium

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To carry out the quantification of amino acids, potassium and sodium, 14 samples per group (cold treated and non-treated) were used. Each sample consisted of a pool (1 mL) of the hemolymph collected from 3–5 individuals.
Free amino acids were determined by liquid chromatography coupled by triple quadrupole mass spectrometry (LC-TQ system, Evoq-Elite Bruker, Germany). From each sample, 100 µL were taken, diluted in Milli-Q water up to 100 mL and filtered with 0.45 µm nylon filters. A final volume of 5 µL was then injected into the LC-TQ system using a Phenomenex Luna NH2 column (150 mm × 2.1 mm, 3 µm).
Potassium and sodium hemolymph levels were determined by inductively coupled plasma mass spectrometry (ICP-MS). We took 100 µL from each sample, which were diluted in Milli-Q water up to 50 mL. An aliquot (5 mL) was continuously aspirated by a peristaltic pump and a final volume of 1 mL was then introduced into the ICP-MS system (Agilent 7700e, Santa Clara, CA, USA).
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10

Targeted Metabolite Analysis of Cell Lysates

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Negatively charged polar analytes including
alpha-hydroxybutyrate and citric acid cycle intermediates were measured
in 10 μL of extracted cell lysates separated using a 150 ×
2.0 mm Luna NH2 column (Phenomenex); mobile phase A: 20mM ammonium
acetate, 20mM ammonium hydroxide in water; mobile phase B: l0mM ammonium
hydroxide in 25% methanol/75% acetonitrile. The column was eluted
isocratically with a linear gradient from 90% to 0% mobile phase B over
10 minutes, then 2 minutes at 0% mobile phase B. MS data were acquired
with multiple reaction monitoring in the negative ion mode on a 5500
QTRAP MS (SCIEX). Raw data were integrated and visually inspected using
MultiQuant software (version 2.1, SCIEX).
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