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Pyrimidine

Manufactured by Merck Group
Sourced in Germany

Pyrimidine is a heterocyclic aromatic organic compound with the chemical formula C4H4N2. It serves as a fundamental building block for various biomolecules, including nucleic acids such as DNA and RNA.

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4 protocols using pyrimidine

1

Quantification of Lignin Composition

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Total lignin was measured by acetyl bromide method with slight modifications from (Foster et al., 2010a ). Briefly, 1 mL of 25% acetyl bromide (Sigma‐Aldrich) was added to 4–5 mg of protein‐free CWRs and incubated at 50 °C for 3 h; then the samples were cooled down on ice for 15 min and 2.5 mL of glacial acetic acid was added to stop the reaction. A volume of 400 μL 1.5 M NaOH and 300 μL of 0.5 M hydroxyl amine hydrochloride (Sigma‐Aldrich) were added to 300 μL of the samples and vortexed. 200 μL of the solution was pipetted into the Corning® 96‐well UV‐Transparent Microplates (Corning, Kennebunk) and the absorbance was recorded at 280 nm with Spark 20M microplate reader (Tecan, Männedorf). A blank with the reagents only was included to correct background absorbance. The extinction coefficient of 17.75 g−1/cm for grasses was used for the calculation of lignin content (Foster et al., 2010a ).
To determine the lignin monomeric composition, thioacidolysis (Rolando et al., 1992 ) was performed with 10 mg protein‐free CWRs by follow the procedure described previously (Zhao et al., 2023 (link)). For derivatization, 50 μL of pyrimidine (Sigma‐Aldrich) and N‐methyl‐N‐trimethylsilyl trifluroacteamide (Sigma‐Aldrich) was added and incubated for 5 h. Derivatized products were quantified with Agilent 7890A gas chromatography as described (Zhao et al., 2021 (link), 2023 (link)).
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2

Synthesis and Characterization of CrCl2(pym)

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Synthesis and handling of CrCl2(pym) were performed in a dry Ar or N2 atmosphere using
a MBraun LABstar glovebox or Schlenk line. The reaction of CrCl2 (200 mg, 1.63 mmol; Fisher Scientific, 99.9%) and pyrimidine
(500 mg, 6.24 mmol; Sigma-Aldrich, ≥98.0%) in 50 mL of methanol
(MeOH) rapidly precipitates an orange-brown microcrystalline powder.
The CrCl2(pym) product was then dried in vacuo giving a ca. 90% total yield. The measured (calculated) elemental
composition was C, 23.45% (23.67%); H, 1.99% (2.40%); and N, 12.94%
(13.80%). This procedure, with quantities scaled up (CrCl2, 3.0 g; pyrimidine, 4.0 g; MeOH, 300 mL), was used to synthesize
the sample used for neutron-scattering measurements. Crystals of sufficient
size for X-ray diffraction studies (127 × 46 × 26 μm)
were grown by vapor diffusion of pyrimidine (100 mg, 1.25 mmol) into
a concentrated solution of CrCl2 in 1 mL of MeOH (10 mg,
0.08 mmol).
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3

Synthesis of Heterocyclic Compounds

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4-Bromo-2-hydroxybenzaldehyde, 2,2-azo-bis(isobutyronitrile) (AIBN), tetrahydrofuran (THF), nitrogen heterocyclic compounds-quinoline, carbazole and pyrimidine were purchased from Sigma Aldrich, Germany. Acetonitrile (HPLC grade) and methanol (HPLC grade) were purchased from Merck, South Africa.
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4

GC-MS Analysis of Fatty Acids in Milk

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The FFAs separated by solvent extraction were characterized using a gas chromatograph coupled with a mass spectrometer (GC-MS) after chemical derivatization. More specifically, an aliquot (5 µL) of the organic phase of the animal or vegetable milk was dried by means of a CRHIST AVC 2–18 set at 60 °C into a 250 µL glass vial (Supelco, MI, Italy). A 4:1 (v/v) N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA, Sigma-Aldrich):pyrimidine (Sigma-Aldrich) freshly-prepared mixture (25 µL) was added to the dry residue. The vial was closed with a perforated cap and incubated in a Thermo Shaker at 70 °C for 10 min, under gentle stirring. Finally, the reaction mixture was allowed to cool for a few minutes at room temperature to be promptly injected (1 µL) into the inlet port of the GC maintained at 250 °C.
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