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13 protocols using axiophot

1

Histological Analysis of Caprin2 Mutant Mouse Eyes

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Mouse eye tissue were dissected from euthanized control (Pax6GFPCre:Caprin2+/cKO) and Caprin2 cKO/cKO mutant animals and carefully cleaned in 1x phosphate buffer saline (PBS) solution. The eyes and lenses were imaged under a light microscope (Nikon SMZ1500, Melville, NY). Whole eyes from 6-month-old control and mutant mice exhibiting lenti-corneal stalk were collected and fixed overnight in 4% paraformaldehyde (PFA, Fisher Scientific, Waltham, MA; Catalog number T-353-500) for hematoxylin and eosin (H&E) staining. The samples were then dehydrated with ethanol, and embedded in paraffin for microtome sectioning. Sagittal paraffin sections (5 μm) were stained with H&E according to standard protocol (Manthey et al., 2014a (link)) and visualized using light microscopy (Zeiss Axiophot) and a Nikon digital camera.
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2

Eye Dissection and Lens Imaging

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Eyes were dissected from mutant and control animals and carefully cleaned in 1x PBS solution. After the eyes were imaged on a light microscope (Zeiss Stemi SV dissecting microscope), the lens was extracted, cleaned, placed in media 199 (1x, with Earle’s salts and L-glutamine) (Cellgro Mediatech, Inc., Manassas, VA) pre-warmed to 37°C, and imaged immediately against a 200-mesh electron microscopy grid (Electron Microscopy Sciences, Hatfield, PA; Catalog G300H-Cu) to observe the refractory property of the tissue as described (Shiels et al. 2007 (link)). For hematoxylin and eosin (H&E) staining, whole eyes (postnatal mice) or heads (embryos) were collected from control and mutants at appropriate stages. Samples were fixed overnight in Pen-Fix (Richard Allan Scientific, Kalamazoo, MI), dehydrated with ethanol, and paraffin-embedded for microtome sectioning. Serial sagittal paraffin sections (5 µm) were H&E stained according a standard protocol and visualized using light microscopy (Zeiss Axiophot) and a Nikon digital camera.
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3

Histopathology and Immunohistochemistry of Zebrafish Heads

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Adult zebrafish were sacrificed and head tissue processed for histopathology and immunohistochemistry as described previously40 (link). For histopathology tissues fixed in Davidson’s or 10% Formalin (Fisher) were decalcified in Cal-Ex (Fisher), and paraffin embedded at the Iowa State University Clinical Histopathology Laboratory. 6 um sections were stained with Hematoxylin 7211 Richard-Allan Scientific (Fisher) and 3% Eosin Y (Argos Organics). For immunohistochemistry heads were fixed in 4% paraformaldehyde, decalcified in 12% EDTA, and embedded in Tissue-Tek optimal cutting temperature medium (Sakura). 14 um tissue sections were labeled with antibodies anti-phosphohistone-H3 (1:100, Upstate), anti-S100 (1:250, Dako). Secondary antibodies were conjugated with HRP. Tissues were counterstained with modified Mayer’s Hematoxylin (Fisher) and eosin. Slides were photographed on a Zeiss Axiophot using a Nikon Rebel camera and on a Zeiss confocal LSM 700.
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4

Quantitative Imaging of Embryonic Angiogenesis

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Imaging of embryos was performed using a Nikon SMZ1500 fluorescent stereomicroscope with a Nikon DS-5 digital camera or using a Zeiss Axiophot epifluorescent microscope with a Nikon DXM1200 camera. Images of HUVEC cultures were captured on a Nikon Eclipse TS100 microscope fitted with a DS-Fi1c camera with NIS-Elements D software and images of retinal explants were captured using a Nikon SMZ1500 microscope and DXM1200 camera with ACT-1 software. Data were analysed using Adobe Photoshop and Image J. Quantification of embryonic intersomitic vessel outgrowth and nerve outgrowth between treated and control conditions was measured using Image J. To take into account differences in embryo length results are displayed as a ratio between nerve or vessel length to body or somite length respectively. Statistical analyses were conducted using Prism 5.0 (GraphPad Software, La Jolla, CA) or SPSS 20.0 (SPSS Inc., Chicago, USA). Statistical significance was assessed using two-tailed unpaired Student’s t-test, Mann-Whitney U-test, One-way ANOVA or Kruskal-Wallis test followed by Tukey’s or Dunn’s test respectively. Error bars represent standard error of the mean.
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5

Vestibular Neuron Activation Imaging

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Imaging of VNNs labeled for cFos following either centrifugation or sGVS was performed using a Zeiss Axioplan or Nikon Axiophot microscope with 4x-20x objectives in brightfield mode. Image capture software was Slidebook (Intelligent Imaging Innovations, Denver, CO). Counts of cFos-labeled VNNs were performed at 20x using an eye piece reticle with a 10 × 10 grid. Nissl-stained sections and a stereotaxic mouse brain atlas (29 ) were consulted when assigning cells to one VNN or another. Every stained section along the rostro-caudal axis of the VN complex was analyzed. We counted VNNs with strong nuclear cFos labeling in every section that contained the medial vestibular (MeV) or spinal vestibular (SpV) nucleus. cFos-labeled neurons in left and right sides of the brain were counted; counts for each side were averaged.
Imaging of VNNs labeled for cFos and Tubb3 was performed using an Olympus FV-1000 confocal microscope with a 60x oil objective.
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6

Microscopic Imaging Protocol for Research

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Images were taken using a Nikon Eclipse E800, a Zeiss Axiophot or a Nikon AZ100M microscope and adjusted in Photoshop CS5. Confocal images were recorded on a Leica SP5 confocal microscope; confocal stacks were processed with the Leica software and adjusted in Photoshop.
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7

In Situ Hybridization of Mafg in Mouse Embryonic Heads

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Mouse embryonic head tissues at E12.5 and E14.5 were dissected and fixed overnight in 4% PFA, dehydrated, and embedded in tissue freezing media, OCT (Tissue Tek, Torrance, CA) and coronal frozen sections were prepared at 16µm thickness. RNA probes for in situ hybridization analysis were generated as described using primers that incorporated the T7 or SP6 promoter sequences upstream of Mafg cDNA sequence (Lachke et al. 2012b (link)). The amplified cDNA was purified and used as a template for in vitro transcription to prepare sense and antisense digoxygenin-labeled RNA probes. In situ hybridization was performed as described, and imaged using a light microscope (Zeiss Axiophot) with a Nikon digital camera (Lachke et al. 2012b (link)).
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8

Histological Analysis of Postnatal Mouse Eyes

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Eyes (postnatal mice) were removed immediately after sacrifice and fixed in Pen-Fix (Richard Allan Scientific, Kalamazoo, Michigan) for 2 hours. Samples were then transferred into 70% ethanol and paraffin embedded. Six-micron thick sections were prepared, stained by hematoxylin and eosin (H&E) and imaged on a Zeiss Axiophot fitted with a digital Nikon camera.
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9

In Situ Hybridization of Caprin2 mRNA

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In situ hybridization (ISH) analysis was performed as described in detail (Lachke et al., 2012b (link)). Embryonic head tissue was obtained from E12.5 and E14.5 wild-type ICR mice and fixed overnight in 4% PFA, cryoprotected using 30% sucrose overnight, and embedded in tissue freezing media, OCT (Tissue Tek, Torrance, CA). Frozen sections (coronal) were prepared at 16μm thickness. Primers were designed with either T7 or SP6 promoter sequences upstream of Caprin2 cDNA-specific region as follows: SP6_Caprin 2-F, 5′ GCTATTTAGGTGACACTATAGATGAAGTCAGCCAAGTCCCA 3′; T7_Caprin 2-R, 5′ TTGTAATACGACTCACTATAGGGCGAAGCTTTTTCTTCTCAGT 3′. These primers were used in PCR to amplify Caprin2 cDNA region that was subjected to in vitro transcription, to in turn generate RNA probes for ISH analysis. Slides hybridized with Caprin2-specific antisense probe were viewed and imaged using a light microscope (Zeiss Axiophot) with a Nikon digital camera.
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10

Imaging Live Embryos and Larvae

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Observation of live embryos and larvae was carried out as in Saavedra et al. (2014) (link) using a Leica inverted SP5 confocal microscope. Larval cuticles were prepared following Wieschaus and Nusslein-Volhard (1986) , L3 larvae were sliced longitudinally before mounting and examined under a Zeiss Axiophot equipped with a Nikon D-300 camera.
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