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8 protocols using dm 6b light microscope

1

Characterization of Wastewater Supernatants

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Turbidity, zeta potential and concentration of orthophosphates were measured in supernatants and membrane filtrates after TRTs following standard procedures [37 ].
Samples of supernatants were filtered before turbidity and zeta potential measurements through the quantitative cellulose filter paper with the pore size 8–12 µm (Grade MN 640 md, Macherey-Nagel™, MACHEREY-NAGEL GmbH & Co. KG, Düren, Germany).
Zetasizer Nano-Z (Malvern, Malvern, UK) was used for zeta potential measurements. HACH 2100 N IS Turbidimeter was used for turbidity measurements (ISO 7027 method). The concentration of orthophosphates was measured using EasyChem Plus colourimetric analyser (SysteaTM, Systea S.p.A., Anagni, Italy) by following the automated method (USEPA Method 365.1).
Samples of sediments were tested for Capillary Suction Time (CST) using T304 test cell (Triton Ltd, Essex, UK). Microscopic images of sediments were taken at ×90 magnification with Leica DM 6B light microscope (equipped with Leica DMC4500 camera) and used to identify particle size distribution (PSD). Area of 2544 × 1816 pix was analysed for each image using ImageJ software package, identifying particle areas and converting into diameters that were used for the cumulative distribution plots according to the [38 ]. The PSD results are expressed according to the [39 ] as distribution points, mean values, span and uniformity.
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2

Immunohistochemical Analysis of GPR30, ESR1, and ER-beta

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The tissue sections (7 μm thick), after deparaffination and rehydration, were incubated in 3% H2O2 for 20 min at room temperature (RT). After blocking the non-specific sites in 1.5% normal goat serum (NGS) diluted with phosphate-buffered saline (PBS) pH 7.2 (NGS cod S1000, Vector Laboratories, Burlingame, CA, USA), sections were incubated with rabbit polyclonal anti-GPR30 antibody (dil. 1:500, cod. PA5-28647, Invitrogen, Waltham, MA, USA), mouse monoclonal anti-ESR1 (dil. 1:200, cod. TA807239, OriGene Technologies Inc., Rockville, MD, USA), and rabbit polyclonal anti-ER-beta (dil. 1:500, cod. PA1-311, Invitrogen, Waltham, MA, USA) overnight at 4 °C.
After washing in PBS, the sections were incubated with HRP-conjugated secondary antibody (dil. 1:4, cod. UNIHRP-050 ImmunoReagents, Raleigh, NC, USA) for 30 min at RT. The immunoreactions were developed with 3,3′-diaminobenzidine tetrahydrochloride (DAB) (SK-4100, Vector Laboratories, Burlingame, CA, USA). In addition, the sections were counterstained by using hematoxylin. The negative controls included omission of primary antibody (Supplementary Materials).
The immunoreactions were observed by two different blind observers who then captured images and analyzed them using a Leica DM 6B light microscope and SFC7000T digital camera.
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3

Histological Visualization of Lipoprotein(a) in Aortic Tissue

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Frozen healthy aorta sections were cut at 7 µm and stained with hematoxylin (Mayer, Clin-Tech Limited, Guildford, United Kingdom) and eosin (in house). For the visualization of Lp(a), tissues were fixed with acetone (Sigma-Aldrich) for 10 minutes, followed by 10 minutes of blocking with Ultravision Protein Block (Thermo Fisher Scientific). The tissue was stained with apo(a) (LPA4, 1:25) for 1 hour, washed, and incubated with the secondary antibody (poly-HRP-anti-mouse IgG, undiluted; ImmunoLogic, Arnhem, NL) for 30 minutes. Apo(a) was visualized with DAB (3,3’diaminobenzidine; ImmunoLogic) and counterstained with hematoxylin. Sections were imaged on a Leica DM6B light microscope.
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4

Glycogen Staining in Larval Fat Bodies

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Glycogen in FB tissues was stained using the Periodic Acid-Schiff (PAS) kit (Sigma). Larval FBs were dissected in 1% BSA in PBS, fixed with 4% paraformaldehyde for 20 min, and washed twice with 1% BSA in PBS. FBs were then incubated in 0.5% period acid solution for 5 min, washed twice with 1% BSA in PBS, then stained with Schiff’s reagent for 15 min, washed again, and mounted on slides. PAS-stained FB tissues were imaged using the Leica DM6B light microscope.
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5

Plastination of Skull Base Anatomy

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Sixteen cadaveric heads with thirty-two sides underwent epoxy sheet plastination. The cadavers were donated for anatomic education and research to the Department of Anatomy at Anhui Medical University. The skull base tissue blocks were removed from the cadaver and plastinated by the E12/E6/E600 resin (Biodur, Heidelburg, Germany) ultrathin plastination technique (11 (link)). These undecalcified resin blocks were serially sectioned in the axial (eight sets), coronal (eight sets), and sagittal (16 sets) planes with the Exakt 310 CP cutting system (Exakt, Norderstedt, Germany). All sections stained with Stevenel’s blue and Alisarin red S were examined and photographed by a Leica DM6 B light microscope (Leica, Bensheim, Germany). This step was performed to better understand the relationship between the bony architectures of the clivus and the surrounding important neurovascular structures, including the internal carotid artery, petrous apex, hypoglossal nerve canal, and occipital condyle.
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6

Aortic Histology and Morphometry

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Aortic tissue was cut parallel to the aortic root before dehydration and embedding in paraffin to obtain optimal cross sections of the root and ascending aorta as described before93 (link). Tissue slices were cut as 7 µm thick sections using a Microm HM340E microtome (ThermoFisher). After deparaffinization and rehydration, the hematoxylin and eosin (HE) staining or Lawson’s elastin staining were performed according to manufacturer’s procedure (Klinipath). Sections were imaged on a Leica DM6B light microscope. Measurements of the aorta root and ascending aorta diameter were performed on three different sections for each sample using the measure tool of Leica Application Suite X software (Leica). Number of elastin breaks was determined by manually counting the locations that showed a break in elastin fibers on a complete preparation. Three different sections for each sample were assessed by two independent blinded observers.
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7

Starch Granule Imaging and Analysis

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Purified starch granules were stained with iodine and imaged under bright field (BF) and polarized light using a Leica DM6B light microscope (Leica Microsystems, Wetzlar, Germany) with Leica DMC 4500 digital camera and LASX software.
The developing grains (15, 20, 25, and 30 DPA) were fixed in a modified FAA solution (Liu et al., 1993 (link)) for 24 h. The FAA solution contained 50% ethanol, 5% formaldehyde, 6% acetic acid, and 5% glycerol. Fixed samples were washed in 70% (v/v) ethanol for 2 h. The grains were cut into 1‐mm slices using a razor blade and freeze‐dried. Purified starch granules and grain slices were sputter coated with gold using an EMITECH 5500X and visualized in a Zeiss EVO LS 15 extended pressure SEM at 20 kV. Images were processed using Photoshop CS6.
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8

Tumor Volume and Morphological Analysis

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A total of one day post-treatment, the six mice in each group were sacrificed and the tumors were completely removed. The tumors from each group were compared by morphological analysis. The long diameter (a) and short diameter (b) of the tumor were measured. Tumor parameters were calculated using the following formulae: Tumor volume (V; mm3)=(ab2)/2; tumor-inhibition rate (%)=[1-(V administration group/V negative control group)] x100; and tumor mass was determined using an electronic balance. A section of the tumor mass was removed, fixed in 10% formalin (pH 7.4) at room temperature for 24 h and embedded in paraffin. The paraffin-embedded samples were sectioned (4 µm). For pathological analysis, sections were stained at room temperature using haemotoxylin for 3 min and eosin for 30 sec (HE). Subsequently, tissue sections were examined using the Leica DM6 B light microscope (Leica Microsystems Inc.; magnification, x4, x10 and x40).
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