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12 protocols using penicillin g

1

Colonic Tissue Sampling for Intestinal Diseases

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The Institutional Ethical Committee of the Rabin Medical Center approved the study (approval number 0763-16-RMC and 0298-17) and a written informed consent of all participating subjects was obtained. The identity of all participating subjects remained anonymous. Tissue samples were taken from surgical specimens of patients undergoing bowel resection for colonic tumors (normal ileal or colonic samples were taken from a distance of at least 10 cm from the tumor) or patients with Crohn’s disease or ulcerative colitis undergoing bowel resection. Specimens were kept overnight at 4°C in RPMI containing 100 units/mL penicillin G (03-031-1B, Biological industries), and 100 µg/mL streptomycin and 2.5 µg/mL amphotericin B (Fungizone, 03-028-1B, Biological industries) supplemented with 10% fetal bovine serum.
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2

HCC Cell Lines Culture Protocol

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Human HCC cell lines MHCC-97H (Zhong Qiao Xin Zhou Biotechnology Co., Ltd, China), PLC/PRF/5 (Hongbo Biotechnology, China), HCCLM3, SK-Hep1, and mouse HCC cell line (Procell, China) were cultured in DMEM containing high glucose (Biological Industries, Israel) with 10% fetal bovine serum (Biological Industries, Israel) at 37 °C in a humidified atmosphere containing 5% CO2. 100 mg/mL penicillin G and 50 μg/mL streptomycin (Biological Industries, Israel) were added. All cell lines were identified by STR and mycoplasma tests and all were used within 3 months after thawing early passage cells.
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3

Culturing and Transfecting Human Osteosarcoma U2OS Cells

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Human osteosarcoma U2OS cells (American Tissue Culture Collection, Manassas, VA, USA) were maintained in RPMI-1640 medium supplemented with 10% fetal bovine serum (Gibco, Life Technologies), 2 mM glutamine, 100 units/mL penicillin G and 100 μg/mL streptomycin sulfate (Biological Industries, Beit-Haemek, Israel) in a humidified atmosphere of 5% CO2 at 37 °C. U2OS cells stably expressing a GFP-tagged lysosomal associated membrane protein 1 (LAMP1-mGFP, a gift from Esteban Dell’Angelica, Addgene plasmid # 34831) [33 (link)] were grown in the presence of 650 µg/mL G418 (Calbiochem, EMD Chemicals, San Diego, CA, USA). The Clomp-resistant subline ClompR was selected and maintained under 10 µM Clomp.
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4

Cytoskeleton Modulation in Cell Culture

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RPMI-1640 medium (#21875034) and fetal bovine serum (#10270106) were from Gibco, Life Technologies, Grand Isle, NY. Glutamine, penicillin G, and streptomycin sulfate were from Biological Industries, Beit-Haemek, Israel. FA-free medium (#R1145), dialyzed fetal bovine serum (#F0392), and VBT (# V1377) were from Sigma-Aldrich, St. Louis, MO, USA. NCZ (#sc-3518), LAN B (#sc-203318), Y27632 (#sc-281642), and CyMl (#sc-500804) were from Santa Cruz Biotechnology, Dallas, TX, USA. Blebb (#13013) was from Cayman Chemical, Ann Arbor, MI, USA. FA (#J62937) was from Alfa Aesar, Tewksbury, MA, USA.
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5

Mouse Microglial Cell Activation Model

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The mouse microglial cell line (BV-2)
was generously provided by Dr. Fernando Pitossi from the Leloir Institute
Foundation (Argentina). Cells were routinely maintained in RPMI 1640
medium supplemented with 10% (v/v) fetal bovine serum, 2 mM l-glutamine, 1 mM sodium pyruvate, penicillin G (100 U/mL, Biological
Industries), streptomycin (0,1 μg/mL, Biological Industries),
and amphotericin B (25 μg/mL, Biological Industries) at 37 °C
in a humidified 5% CO2-95% air incubator. For each experiment,
BV-2 cells were seeded in 6-well plates (8 × 105 cells/mL)
and incubated for 24 h. The medium was then replaced with R-BCM from
each bacterial strain. To induce an inflammatory state, 5 μM
oAβ1–42 was added to each well and samples
were collected after 8 h of incubation. RPMI 1640 culture media was
used as a control.
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6

Characterization of Human Cancer Cell Lines

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Twelve well-characterized human adherent cancer cell lines from different solid tumor types were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA): MCF7 and MDA-MB-231 for breast adenocarcinoma; A375 for malignant melanoma; A-431 for epidermoid carcinoma; A549 and NCI-H460 for lung carcinoma; PC-3 for prostate adenocarcinoma; LNCaP for prostate carcinoma; SW480 and HT-29 for colorectal adenocarcinoma; U-87 MG and T98G for glioblastoma as well as primary normal bronchial/tracheal epithelial cells. Jurkat acute T cell leukemia cells were provided as a gift from Professor Yoram Reiter at the Technion, Israel Institute of Technology.
MCF-7, MDA-MB-231, A375, A-431, HT-29, U-87 MG and T98G cells were grown in high glucose DMEM (Sigma-Aldrich, D5796). A549, NCI-H460, PC-3, LNCaP, SW480 and Jurkat cells were grown in RPMI-1640 medium (Sigma-Aldrich, R8758) supplemented with 10% FBS (Biological Industries, 04-007-1A) and 100 units/ml of penicillin G and 100 μg/ml of streptomycin (Biological Industries, 03-031-1B). Primary normal cells were grown in serum-free conditions in Airway Epithelial Cell Basal Medium (ATCC, PCS 300-030) supplemented with the adequate cell growth kit (ATCC, PCS-300-040). All cells were maintained in a humidified atmosphere of 5% CO2 at 37 °C.
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7

Stable Expression of SYK Variants

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SW480 human colon epithelial (ATCC, Manassas, VA) were seeded in 6-well plates and the next day transfected with human WT SYK expression vector pWZL-Neo-Myr-Flag-SYK, and the SYK S550Y derivative, as well as a GFP-carrying vector, to assess transfection, using Lipofectamine 3000 (Thermo Fisher Scientific). 48 hours post transfection G418 (Enzo, 1.1 mg/mL) was added to select for stable expression. Resistant cells were maintained in the presence of G418. All cells were grown in RPMI medium, supplemented with 10% FBS, 100 units/mL penicillin G, and 100 μg/mL streptomycin (Biological Industries, Beit Haemek, Israel) and maintained in a humidified incubator at 37°C with 5% CO2.
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8

Stable Expression of SYK Variants

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SW480 human colon epithelial (ATCC, Manassas, VA) were seeded in 6-well plates and the next day transfected with human WT SYK expression vector pWZL-Neo-Myr-Flag-SYK, and the SYK S550Y derivative, as well as a GFP-carrying vector, to assess transfection, using Lipofectamine 3000 (Thermo Fisher Scientific). 48 hours post transfection G418 (Enzo, 1.1 mg/mL) was added to select for stable expression. Resistant cells were maintained in the presence of G418. All cells were grown in RPMI medium, supplemented with 10% FBS, 100 units/mL penicillin G, and 100 μg/mL streptomycin (Biological Industries, Beit Haemek, Israel) and maintained in a humidified incubator at 37°C with 5% CO2.
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9

Establishing Orbital Fibroblast Cultures

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The primary cultures of orbital fibroblasts were established according to our previous study [16 (link)]. Briefly, the orbital tissues were minced aseptically in phosphate-buffered saline (PBS, pH 7.3) and then incubated with a sterile solution containing 0.5% collagenase and dispase (Sigma-Aldrich Chemical Co., St. Louis, MO, USA) for 24 hours in an incubator filled with an atmosphere of 5% CO2 and kept at 37°C. The mixture of digested orbital tissues was pelleted by centrifugation at 1,000 ×g and then resuspended in Dulbecco's Modified Eagle's Medium (DMEM, purchased from Gibco Life Technologies, Gaithersburg, MD, USA) containing 10% fetal bovine serum (FBS) and a cocktail of antibiotics (Biological Industries, Kibbutz Beit Haemek, Israel), which was composed of 100 U/mL penicillin G and 100 μg/mL streptomycin sulfate (Biological Industries, Kibbutz Beit Haemek, Israel). The cultured orbital fibroblasts were used between the 3rd and 5th passages and the cell cultures at the same passage number were used for the same set of experiments.
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10

Culturing Human Epithelial Cancer Cell Lines

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Four well-characterized human adherent epithelial cancer cell lines were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA): Scc4 (ATCC® CRL1624TM), Scc9 (ATCC® CRL1629TM), Scc25 (ATCC® CRL1628TM), and Cal27 (ATCC® CRL2095TM). A human adherent fibroblast cell line was purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA): Hs895sk (ATCC® CRL-7636TM). Cells were grown in DMEM/F-12 (Biological Industries, Kibbutz Beit-Haemek, Israel, 01-170-1A), supplemented with 2.5 mM L-glutamine (Biological Industries, 03-020-1A), 100 units/mL of penicillin G, 100 μg/mL of streptomycin (Biological Industries, 03-031-1B), 0.5 mM sodium pyruvate (Biological Industries, 03-042-1B) 400 ng/mL hydrocortisone (Sigma-Aldrich, 50-23-7) and 10% fetal bovine serum (Biological Industries, 04-007-1A). Cells were seeded and incubated to 70–80% confluence before experiments commenced. All cells were maintained in a humidified atmosphere at 37 °C with 5% CO2.
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