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8 protocols using streptomycin

1

Rat Bone Marrow Mesenchymal Stem Cell Isolation

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Bone marrow derived MSCs were isolated from the femoral shaft of 6 week old rats (Fischer Male) and expanded in high-glucose Dulbecco's modified Eagle's medium GlutaMAX (hgDMEM) supplemented with 10% v/v fetal bovine serum (FBS), 100 U/ml penicillin, 100 μg/ml streptomycin (all Gibco Biosciences, Dublin, Ireland) and 2.5 μg/ml amphotericin B (Sigma-Aldrich, Dublin, Ireland) at 5% pO2. Following colony formation, MSCs were trypsinized, counted, seeded at density of 5000 cells cm 2 in 500 cm 2 triple flasks (Thermo Fisher Scientific), supplemented with hgDMEM, 10% v/v FBS, 100 U/ml penicillin, 100 μg/ml streptomycin, 2.5 μg/ml amphotericin B, and 5 ng/ml human fibroblastic growth factor-2 (FGF-2; Prospec-Tany TechnoGene Ltd., Israel) and expanded to passage 2 at 5% pO2.
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2

Sphere Formation Assay for Cancer Stem Cells

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SW620 and HT29 cells (1000 cells/well) were seeded in 24-well ultralow adherence plates (Corning, NY, USA) in 1 ml of CSC media, DMEM/F12 supplemented with B27 (Gibco, Invitrogen, Carlsbad, CA, USA), 2 mM L-glutamine (Hyclone), 10 ng/μl bFGF (Prospec, East Brunswick, NJ, USA), 20 ng/μl EGF (Prospec), and 1% antibiotic antimycotic solution (10,000 units/ml penicillin and 10 mg/ml streptomycin, Welgene). Cells were cultured for 14 d, and CSC medium was changed every 72 h. SW620 cells were treated with 0, 1.25, 2.5 μM αM, and HT29 cells were treated with 0, 1.25, 2.5 μM αM during the sphere forming assay. The spheres were examined using a microscope at 14 d (Zeiss Axiophot, Carl Zeiss Microscopy LLC, Thornwood, NY, USA). Quantitative real-time PCR and Western blot analyses were conducted with these cells.
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Isolation and Differentiation of Monocyte-Derived Dendritic Cells

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Peripheral blood mononuclear cells (PBMCs) were obtained from 50 ml blood samples of control subjects and patients with T1D by means of Ficoll Paque (GE Healthcare, Marlborough, MA, USA) density gradient centrifugation. Monocytes were further magnetically isolated using the EasySep Human CD14 Positive Selection Kit (STEMCELL Technologies, Vancouver, BC, Canada) following the manufacturer’s instructions. Once CD14 purity in the positively selected fraction was >70%, monocytes were cultured at a concentration of 106 cells/ml in X-VIVO 15 media (Lonza, Basel, Switzerland), supplemented with 2% male AB human serum (Biowest, Nuaillé, France), 100 IU/ml penicillin (Normon SA, Madrid, Spain), 100 μg/ml streptomycin (Laboratorio Reig Jofré, Sant Joan Despí, Spain), and 1,000 IU/ml IL-4 and 1,000 IU/ml GM-CSF (Prospec, Rehovot, Israel) to obtain monocyte-derived DCs. After 6 days of culture, DC differentiation yield was assessed by CD11c-APC staining (Immunotools, Friesoythe, Germany) and cell viability was determined by annexin V-PE (Immunotools) and 7aad staining (BD Biosciences, San Jose, CA, USA) using flow cytometry (FACS Canto II, BD Biosciences). The negatively selected fraction of PBMCs was cryopreserved in Fetal Bovine Serum (ThermoFisher Scientific, Waltham, MA, USA) with 10% dimethylsulfoxide (Sigma-Aldrich, Saint Louis, MO, USA) and stored for later use.
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Isolation and Differentiation of Human moDCs

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Isolation of human PBMCs from buffy coats from healthy donors (Dutch Blood Bank, Netherlands) was performed by collecting the enriched fraction of cells after density gradient centrifugation (Greiner Bio-One, The Netherlands) as previously described (18 (link)). Monocytes were isolated from PBMCs through magnetic separation via negative selection according to the manufacturer’s instructions (Miltenyi Biotec, Germany). Subsequently, monocytes were cultured for 7 days in RPMI 1640 (Lonza, Switzerland) with 10% FCS, penicillin (100 U/mL), and streptomycin (100 μg/mL) at 2×10^6 cells/mL. Human recombinant IL4 (100 ng/mL) and GM-CSF (60 ng/mL) (Prospec, Israel) were added to differentiate monocytes into monocyte-derived dendritic cells (moDCs). Every other day half of the medium was refreshed and new cytokines were added until the moDCs were collected for coculture. Naïve CD4+ T cells were isolated from PBMCs using a negative selection MACS kit according to the manufacturer’s instructions (Miltenyi Biotec). The collected T cells were frozen in 90% FCS and 10% DMSO at −80°C until use during coculture. Upon gentle thawing, the cells were resuspended in T cell medium (IMDM with 10% FCS, penicillin (100 U/mL), streptomycin (100 μg/mL), 20 μg/mL apotransferrin (Sigma-Aldrich), and 50 μM β-mercaptoethanol) and directly used.
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5

Monocyte-Derived Dendritic Cell Culture

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Monocytes were cultured at a concentration of 0.75 × 106 cells/mL in a 6-well plate in RPMI 1640 supplemented with 10% heat-inactivated FCS, penicillin (100 U/mL)/streptomycin (100 μg/mL), IL4 (10 ng/mL; ProSpec-Tany TechnoGene Ltd., Ness Ziona, Israel) and GM-CSF (5 ng/mL; ProSpec-Tany TechnoGene Ltd., Ness Ziona, Israel). The cells were kept for 7 days in an incubator at 37°C and 5% CO2. At days 2, 3, and 6, 1 mL medium was refreshed. At day 7, the imDC were suitable to use in the transwell IEC-DC coculture assay.
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6

Isolation and Expansion of Porcine Mesenchymal Stem Cells

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Bone marrow–derived MSCs were isolated from the femoral shaft of 4-month-old pigs and expanded according to a modified method for human MSCs26 (link) in high-glucose Dulbecco’s modified Eagle’s medium (hgDMEM) GlutaMAX supplemented with 10% v/v fetal bovine serum (FBS), 100 U mL−1 penicillin/100 μg mL−1 streptomycin (all Gibco Biosciences, Dublin, Ireland) and 2.5 μg mL−1 amphotericin B (Sigma-Aldrich, Dublin, Ireland) at 20% pO2. Tri-potentiality was confirmed prior to use. Following colony formation, MSCs were trypsinised, counted, seeded at density of 5000 cells cm2 in 500 cm2 (link) triple flasks (Thermo Fisher Scientific), supplemented with hgDMEM, 10% v/v FBS, 100 U mL−1 penicillin/100 μg mL−1 streptomycin, 2.5 μg mL−1 amphotericin B and 5 ng mL−1 human fibroblastic growth factor-2 (FGF-2; ProSpec-Tany TechnoGene Ltd, Israel) and expanded to passage 2.
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7

Generation of Monocyte-Derived Dendritic Cells

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PBMC were isolated as previously described [14] . CD14 + cells were isolated from PBMC by negative selection using MACS (Miltenyi Biotec) according to the manufacturer's protocol. Purity was assessed by flow cytometry and was generally 90-95%. CD14 + cells were cultured for 7 days in RPMI1640 (Gibco) supplemented with 10% heat-inactivated FCS, penicillin (100 U/mL)/streptomycin (100 μg/mL), recombinant human IL-4 and GM-CSF (30 and 15 ng/mL, respectively; Prospec). Cultures were supplemented with recombinant galectin-9 (1 μg/mL; R&D Systems) or 50% IEC-conditioned medium, starting from the start of moDC cultures where indicated. Medium was replenished at days 2, 3, and 5 of culture.
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8

Chondrocyte Pellet Culture Protocol

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After isolated chondrocytes were plated for 72 h for cell recovery, chondrocytes were washed with sterile PBS (Ca2+/Mg2+ free) twice. Then, chondrocytes were trypsinized for 5 min at 37 °C and centrifuged at 433 × g for 5 min to collect chondrocytes for making pellets following the procedure below54 (link). After a cell wash and cell counting with trypan blue, 5 × 105 chondrocytes were resuspended in 500 µL defined chondrogenic SFM [high glucose DMEM, HEPES (10 mM), human serum albumin (125 mg/mL), ascorbic acid 2-phosphate (365 lg/mL), dexamethasone (100 nM), and L-proline (40 lg/mL) (Sigma-Aldrich), ITS + 1 premix (5 µL, 100x) (Corning, Discovery Labware, Inc.), 100 units/mL penicillin, 100 µg/mL streptomycin, TGF-b3 10 ng/mL; ProSpec, NJ, USA] in a 1.5 mL sterile conical microtube (Bio Basic Inc, Ontario, Canada). Then, chondrocytes were centrifuged at 433 × g and 22 °C for 5 min to form a pellet at the bottom of the microtube using an Allegra X-22R centrifuge (Beckman Coulter, US). The pellets were cultured in the SFM under 3% O2 and 5% CO2 at 37 °C in a humidified incubator for 21 days, with SFM changes twice a week.
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