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11 protocols using lc 20 prominence hplc system

1

Hormone Extraction and Analysis from Plant Tissues

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Extraction of hormones from seeds or leaves of salt-stressed and control plants, which were previously biostimulated or not with triacontanol, was carried out according to Trupiano and colleagues57 (link). For HPLC analysis, an LC-20 Prominence HPLC system was used (Shimadzu, Kyoto, JP); it comprised an LC-AT quaternary gradient pump, an SPD–M20A photodiode array detector, and an autosampler SIL-20 AH. The injection volume was set at 20 µl, and the sample separation was performed with a Gemini–NX C18 column (250 × 4.5 mm, 5 µm particle size) (Phenomenex). Hormone elution was carried out with a gradient of solution B (99.9/0.1 v/v acetonitrile/TFA) in solution A (99.9/0.1 v/v water/TFA), running at a flow rate of 1.5 ml/min, at 45 °C. Solution B ramped from 15 to 30% in 5 min, from 30 to 50% in further 5 min, and increased to 80% in 2 min; finally, the gradient returned to the starting conditions in 3 min. The compounds of interest were identified based on their retention time and the corresponding UV spectra as well as by comparison with standard abscisic acid (ABA) (Duchefa Biochemie, Haarlem, NL) and gibberellins (GAs) (Merck). The latter ones were also used to build up calibration curves in the 5–200 µg/ml range, at wavelengths of 254 nm for ABA and 205 nm for GAs.
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2

Characterization of Recombinant SF Mutants

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SEC-MALS was used to characterize
the recombinant expressed SF
mutants in solutions relating to their purity, native oligomers or
aggregates and molar masses. Analyses were performed on an LC20 prominence
HPLC system equipped with the refractive index detector RID-10A, the
photodiode array detector SPD-M20A (all from Shimadzu, Japan), and
a MALS Heleos Dawn8C plus QELS detector (Wyatt Technology, U.S.A.).
A Superdex 200 10/300 GL column (Cytiva, U.S.A.) was used and equilibrated
with PBS plus 200 mM NaCl (pH 7.4) as running buffer. Experiments
were performed at a flow rate of 0.75 mL min−1 at
25 °C and analyzed using the ASTRA 6 software (Wyatt Technology,
U.S.A.). Proper performance of the MALS was verified by the determination
of the molar mass of a sample of bovine serum albumin. Prior to analysis,
samples were thawed, centrifuged (16000 g, 10 min), and filtered by
a 0.1 μm Ultrafree-MC filter (Merck Millipore, Germany). A total
amount of 25 μg of the respective SF variant was injected for
each measurement.
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3

Characterizing CD19-AD2 using SEC-MALS

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Size-exclusion chromatography combined with multi-angle light scattering (SEC-MALS) was used to determine the purity, the aggregation behavior and the molar mass of CD19-AD2. Analysis was performed on an LC20 prominence HPLC system equipped with the refractive index detector RID-10A, the photodiode array detector SPD-M20A (all from Shimadzu, Japan) and a MALS Heleos Dawn8C plus QELS detector (Wyatt Technology, United States). A Superdex 200 10/300 GL column (GE Healthcare, United States) was used and equilibrated with PBS containing 200 mM NaCl (pH 7.4) as running buffer. Experiments were performed at a flow rate of 0.75 mL min–1 at 25°C and analyzed using the ASTRA 6 software (Wyatt Technology, United States). Determination of the molar mass of a sample of bovine serum albumin was performed to verify proper performance of MALS. Prior to analysis, samples were thawed, centrifuged (16000 g, 10 min) and filtered using 0.1 μm Ultrafree-MC filter (Merck Millipore, Germany). A total amount of 24 μg CD19-AD2 was injected for each measurement.
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4

Quantifying Phytohormone Levels in Arabidopsis

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Hormone extraction from A. thaliana wt, strp mutant, and STRP OE plants was performed according to [61 (link)]. HPLC analysis was performed on a LC–20 Prominence HPLC system (Shimadzu, Kyoto, Japan) consisting of an LC–20AT quaternary gradient pump, an SPD–M20A photodiode array detector (PDAD), and a SIL–20 AH autosampler (20 µL injection volume). Sample separation was carried out with a Gemini–NX C18 column (250 × 4.5 mm, 5 µm particle size) (Phenomenex, Torrance, CA, USA), and hormones eluted with a flow rate of 1.5 mL min−1 using a gradient of acetonitrile (ACN) containing 0.1% (v/v) trifluoroacetic acid in aqueous 0.1% (v/v) trifluoroacetic acid, at 45 °C. ACN gradient started from 15% and linearly increased to 30 % in 5 min, from 30% to 50% in 5 min, and from 50% to 80% in 2 min, followed by a re-equilibration phase at initial gradient composition in 3 min. ABA detection was performed at 254 nm according to its retention time, UV spectra, and literature data. Purified ABA (Duchefa Biochemie, Haarlem, The Netherlands) was used to build up a calibration curve in the range of 5–200 µg/mL at 254 nm. The reported values indicate the ABA concentration expressed as μg of hormone/g of fresh weight.
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5

Quantitative Analysis of M451 Accumulation in Plants

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For the quantitative analysis of M451 accumulation in plants, we used untreated seedlings as a negative control, seedlings from seeds treated with 0.1% sulfamethoxazole (Sigma Aldrich) as a positive seed dressing control, and seedlings from seeds treated with 0.1% M451 seed dressing as the test group. The samples were freeze-dried for 24 h for this analysis (Jones-Lepp et al., 2010 (link)). The extraction and cleanup of the samples were performed as previously described by Pan et al. (2014) (link). The extracted samples were examined using ultra-high-performance liquid chromatography coupled with quadrupole-linear ion-trap tandem MS (UPLC-MS/MS; LC-20 Prominence HPLC system coupled with a LCMS-8050 triple quadrupole mass spectrometer; Shimadzu, Tokyo, Japan) as described in Gros et al. (2013) (link). The chromatographic and MS conditions for the analysis of M451 accumulation are described in Supplementary Table 1.
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6

HPLC Separation of Multicomponent Mixtures

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HPLC was performed on a Shimadzu LC-20 Prominence HPLC system (Shimadzu, Tokyo, Japan) equipped with a UV sensor and a Shodex ODP-40 4E reverse-phase column for the separation of multicomponent mixtures. The gradient elution program was as follows: from time point 0.01 min to 4.00 min, 100% A; from 4 to 60 min, 100–25% A; from 60 to 75 min, 25–0% A; then, a control wash from 75 to 120 min at 0% A. The entire HPLC analysis was carried out with an ESI detector at wavelengths of 230 and 330 nm; the temperature was set to 17 °C, and the injection volume was 1 mL.
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7

HPLC Analysis of Protein Oxidation

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Analyses were performed on an LC20 prominence HPLC system equipped with the refractive index detector RID‐10A, the photodiode‐array detector SPD‐M20A (all from Shimadzu, Japan), and a MALS Heleos Dawn8+ plus QELS detector (Wyatt Technology, Santa Clara, California, USA). The column (Superdex 200 10/300 GL, GE Healthcare, Chicago, Illinois, USA) was equilibrated with 1 × PBS plus 200 mm NaCl (pH 7.4) as running buffer. Experiments were performed at a flow rate of 0.75 mL·min−1 at 25 °C and analyzed using the astra 6 software (Wyatt Technology, Santa Clara, California, USA). Proper performance of molar mass calculation by MALS was verified by the determination of a bovine serum albumin sample. All proteins were incubated for 1 h at room temperature with zerofold, fivefold and 15‐fold excess (calculated as molar ratio H2O2/MB) of H2O2 before being centrifuged (at 15 000 g for 2 min at 20 °C), filtered (0.1‐mm Ultrafree‐MC filter, Merck Millipore, Darmstad, Germany), and finally analyzed. A total amount of 60 µg was injected for all measurements.
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8

LC-MS/MS Analysis of Dinophysistoxin

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An atmospheric pressure ionization (API) 2000 triple quadrupole mass spectrometer (ABI SCIEX, Foster City, CA, USA) and an LC-20 Prominence HPLC system (Shimadzu, Tokyo, Japan) were used for LC-MS/MS analysis of DTX. The systems were interfaced through electrospray ionization (ESI) in a positive ion mode. For LC, a Phenomenex Luna C18 column (2.0 × 150 mm, 5 μm) and an isocratic mobile phase consisting of 15% water and 85% acetonitrile (v/v) were used. The autosampler and the column oven were maintained at 4 and 40 °C, respectively. The ESI source parameters were set as follows: spray voltage, 5500 V; spray temperature, 350 °C; gas 1, 30 psi; gas 2, 34 psi; collision gas, 6 psi; curtain gas, 16 psi. For sensitive and selective identification of DTX, multiple reaction monitoring (MRM) was carried out. As the precursor ion for MRM, the Na adduct ion of DTX, observed at 829.9 m/z, was selected. The MRM precursor/product ion transitions used for DTX in the present study were m/z 829.9/548.9 (screening transition), 829.9/303.8 (the first confirmatory transition), and 829.9/248.0 (the second confirmatory transition). All data were acquired and analyzed using Analyst, version 1.5.2 (ABI SCIEX, Foster City, CA, USA).
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9

Protein Purity and Oligomeric State Analysis

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Protein purity and the oligomeric state of the recombinantly produced DdPoxA were determined by size-exclusion chromatography (SEC) combined with MALS. Measurements were performed on an LC20 prominence HPLC system equipped with the refractive index detector RID-10A, the photodiode array detector SPD-M20A (all from Shimadzu), and a MALS Heleos Dawn8+ plus QELS detector (Wyatt Technology). The column (Superdex 200 10/300 GL, GE Healthcare) was equilibrated with Dulbecco's PBS plus 200 mm NaCl (pH 7.2) as running buffer. Experiments were carried out at a flow rate of 0.75 ml/min at 25 °C and analyzed using the ASTRA 6 software (Wyatt Technology). Accuracy of molar mass determination was verified by measuring a sample containing bovine serum albumin. The protein (25 μg per analysis) was centrifuged (17,000 × g, 10 min, 20 °C) and filtered (0.1 μm Ultrafree-MC filter from Merck Millipore) before applying to the column.
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10

HPLC Analysis of Lysine and Glucose

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The aqueous phase of the adsorption experiments was analyzed by using a Shimadzu Prominence LC‐20 HPLC system. For the measurements of lysine and lysine/glucose mixtures, the system was equipped with a Primesep S 4,6×150 mm mixed zone column provided by SIELC Technologies and a refractive index detector. As the eluent, 80 mm ammonium formate in a water/acetonitrile mixture (60:40) was used. The temperature was kept at 50 °C, and the flow rate was 0.8 mL min−1.
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