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8 protocols using ttf 1 clone 8g7g3 1

1

Histological Diagnosis of Lung Cancer

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The histological diagnosis of lung cancer was made according to the IASLC/ATS/ERS lung adenocarcinoma classification (14 (link)) and the WHO criteria (15 ) and was confirmed by immunohistochemistry using a panel of antibodies: TTf-1 (clone 8G7G3/1, Dako), Napsin A (Napsin A, Rabbit Polyclonal, Cell Marque), p63 (Rabbit Polyclonal, Leica) or TTf-1 (clone 8G7G3/1, Dako), CK7 (clone OV-TL 12/30, Dako), CK20 (clone Ks 20.08, Dako), and CEA (clone AMT28, Dako). Tumor stage was determined according to the TNM classification (16 ).
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2

Immunohistochemical Tissue Staining Protocol

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Immunohistochemical staining of lung, liver, and kidney sections was performed using a biotin-free polymer system. The sections were deparaffinized in xylene, rehydrated in graded series of ethanol, and rinsed with distilled water. Antigen retrieval was performed by immersing sections in DIVA Decloaker (Biocare Medical) at 125°C for 30 seconds in a steam pressure decloaking chamber (Biocare Medical) followed by blocking for 10 minutes with SNIPER Reagent (Biocare Medical). The sections were incubated with mouse anti-human CD163 (clone 10D6; Abcam), mouse anti-human thyroid transcription factor 1 (TTF-1) (clone 8G7G3/1; Dako), or mouse anti-Plasmodium lactate dehydrogenase (pLDH) (clone 19; MyBioSource) overnight at 4°C followed by a detection polymer system (MACH 2 [Biocare Medical], or in the case of anti-TTF1 staining, EnVision+ System-HRP Labeled Polymer [Dako]). Antibody labeling was visualized by alkaline phosphatase chromogen development (Warp Red Chromogen Kit; Biocare Medical), or for anti-TTF1 staining, immunoperoxidase with 3-3’-diaminobenzidine. Nuclei were counter stained using Mayer’s hematoxylin (Vector Laboratories).
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3

Immunohistochemical Analysis of Lung Tumors

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All tissues were fixed in 10% formalin‐fixed paraffin‐embedded (FFPE) after routine processing. Haematoxylin and eosin (H&E)‐stained slides and Elastica van Gieson‐stained slides were available for all patient samples. All tumours measuring 3 cm or less in diameter were submitted in their entirety, and larger tumours were sampled extensively. Pathological diagnoses were based on the 2015 World Health Organization classification [23]. For immunohistochemical analyses of TTF‐1 (clone 8G7G3/1; DAKO, Glostrup, Denmark), tumours were assembled into tissue microarrays (TMAs), using 1.5–2.0 mm cores sampled from one or two different representative areas of each FFPE tissue block (Pathology Institute Corp., Toyama, Japan), as previously described [24]. TTF‐1 was considered positive if 1% or greater of tumour cells were stained.
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4

Histological Characterization of NSCLC Patients

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The study enrolled 171 patients with NSCLC (squamous cell carcinoma and adenocarcinoma, T1-4N0-3M0) who were treated in the Cancer Research Institute, Tomsk NRMC, between 2005 and 2011. Patients were excluded if they were refused surgery and had an Eastern Cooperative Oncology Group (ECOG)/WHO performance score >2, small-cell lung cancer, associated severe diseases, and cardiovascular and pulmonary decompensation. Metastatic involvement was identified from the Local Cancer Register. The study was approved by the Institutional Review Board (IRB) (December 10, 2012; the number of approvals is 16).
The histologic diagnosis of lung cancer was made according to the International Association for the Study of Lung Cancer/American Thoracic Society/European Respiratory Society (IASLC/ATS/ERS) lung adenocarcinoma classification (8 ) and the WHO criteria (9 (link)) and was confirmed by immunohistochemistry using a panel of antibodies: TTF-1 (clone 8G7G3/1, Dako), Napsin A (Rabbit Polyclonal, Cell Marque), and p63 (Rabbit Polyclonal, Leica) (Figure 1).
Cancer stage was determined according to the TNM classification (10 (link)). The type of morphological lesions in the bronchial epithelium (BCH, SM, and D) of small bronchi (d = 0.5–2 mm), obtained at a distance of ~3 cm from the tumor edge during surgery, was assessed as described earlier (11 (link)).
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5

Immunohistochemical Staining Profiles

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Immunohistochemical stains for TTF-1 (clone:8G7G3/1; 1:50 dilution; Dako, Carpinteria, CA) and S100 (polyclonal rabbit; 1:500; Dako) were performed on 8 cases, and for HBME-1 (clone HBME-1; 1:100; Dako, Carpinteria, CA) and Galectin-3 (clone 9C4; prediluted; Ventana Medical Systems, Tucson, AZ, USA) on 6 cases using a Ventana Autostainer (Ventana Medical Systems, Tucson, AZ, USA). The antibody labeling for TTF-1 was performed using the avidin-biotin complex method and visualized using the i-VIEW 20 diaminobenzamide (DAB) detection kit (Ventana Medical Systems, Tucson, AZ, USA) with a brown chromogen substrate, while S100 was labeled using ultraVIEW alkaline phosphatase (AP) red detection kit (Ventana Medical Systems, Tucson, AZ, USA).
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6

Immunohistochemical Profiling of Lung Tumors

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The tissue sections were immunostained with commercially available antibodies including thyroid transcription factor-1 (TTF-1) (clone 8G7G3/1, Dako), p40 (clone BC28, Biocare Medical) and CK5/6 (clone D5/16 B4, Dako) on a Leica BOND-MAX system (Leica Microsystems, Newcastle, UK). Tumors completely absent of TTF-1 staining were considered as TTF-1 negative. For p40 or CK5/6 staining, the moderate staining pattern was defined as 10 to 50% of tumor cells showing immunoreactivity, while the diffuse staining pattern was defined as more than 50% of tumor cells with immunoreactivity. Cases with staining intensity similar to internal controls represented by bronchial/bronchiolar basal cell layer were recognized as strong intensity.
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7

Histological Examination of Surgical Specimens

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Surgical specimens were examined and processed according to the current College of American Pathologists (CAP) guidelines. The specimens were fixed in 10% buffered formalin for 24–48 h, sampled and embedded in paraffin. Three-micrometer-thick tissue sections were cut and stained with hematoxylin and eosin (H&E). Immunohistochemical staining of sections representative of both neoplastic histotypes of primitive tumors and metastasis was carried out with the following antibodies: chromogranin A, synaptophysin, transcriptional thyroid factor-1 (TTF1, clone 8G7G3/1; Dako, Glostrup, Denmark), pan-cytokeratins (AE1-3 clone, Dako), cytokeratin 7, anaplastic lymphoma kinase (ALK, D5F3 clone, Ventana Medical Systems, Inc.), c-ROS oncogene 1 (ROS1, D4D6 clone, Cell Signaling), and tumor proportion score (TPS) of programmed death-ligand 1 (PDL1, clone 22C3, Dako) were also recorded based on recent guidelines.
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8

Immunohistochemical Profiling of NTRK-Rearranged Thyroid Tumors

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IHC stains were performed using 4-μm-thick formalin-fixed paraffin-embedded (FFPE) sections of selected representative tissue blocks from the 11 NTRK-rearranged thyroid tumors. A Bond 3 automated stainer (Leica Microsystems, Bannockburn, IL) and compatible primary antibodies for S100 protein (polyclonal and prediluted; Ventana, Oro Valley, AZ), mammaglobin (clone 304-1A5; dilution 1:250; Dako, Carpinteria, CA), GATA3 (clone L50-823, dilution 1:200; Cell Marque, Rocklin, CA), PAX8(polyclonal, dilution 1:1000; Proteintech, Rosemont, IL), TTF1 (clone 8G7G3/1; dilution 1:300; Dako, Carpinteria, CA), BRAF V600E (clone VE1; dilution 1:200; Abcam, Cambridge, United Kingdom), thyroglobulin (dilution 1:800; Cell Marque, Rocklin, CA) and HBME1 (prediluted; Ventana, Oro Valley, AZ) were used. Appropriate positive and negative controls were included. Stained slides were reviewed by three pathologists (VN, PMS, and YHC) and graded as negative (0% tumor cells stained), focal (<50%) and diffuse (>50%).
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