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Ix81 inverted confocal microscope

Manufactured by Olympus
Sourced in Japan

The IX81 inverted confocal microscope is a research-grade instrument designed for high-resolution fluorescence imaging. It features a fully motorized platform and advanced optics, enabling precise control and high-quality image capture. The IX81 is capable of performing confocal laser scanning microscopy, a technique that allows for optical sectioning and the acquisition of three-dimensional data from biological samples.

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21 protocols using ix81 inverted confocal microscope

1

Analyzing Myosin II B Dynamics in MEFs

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MEFs were seeded on poly L-lysine coated glass coverslips (8×104 cells/6-well plate/coverslip) for 24 h, washed and starved for 18 h. WNT9B (500 ng/ml) was added at time 0 and cells were incubated at 37°C for 30, 60, and 120 min. Cells were fixed in 10% formalin solution (Sigma-Aldrich) at room temperature (RT), permeabilized with 0.2 % Triton X-100 in PBS, blocked in 5% BSA, 0.1% Tween/Tris-buffered saline and incubated with rabbit α-Myosin II B (Sigma-Aldrich, 1:200) in blocking buffer at RT for 1 hr. Cells were washed with PBS and incubated with donkey anti-rabbit Alexa 568 secondary antibody (Molecular Probes, 1:2000) and phalloidin coupled to Alexa 488 (Molecular Probes, 1:40) for 1 h at RT. DNA was stained with 5 μg/ml DAPI for 10 min. Coverslips were mounted with ProLong (Molecular Probes), and cells were imaged using an Olympus IX81 inverted confocal microscope. Images were analyzed by the Olympus Fluoview software.
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2

Immunofluorescence Staining of Cells and Tissues

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Cells were washed with and fixed in 2% formaldehyde for 15 min at 37°C. Cells were blocked and permeabilized (1.5% BSA, 5% goat serum, and 0.2% triton X-100 in PBS) for 1 h at 37°C. Antibodies (1/100) were incubated at 4°C overnight and AlexaFluor-conjugated secondary antibodies (1/500 in blocking buffer) incubated for 1 h at room temperature. AF647-conjugated Phalloidin (1/200) was added in PBS containing 1% goat serum and incubated for 20 min at room temperature. Slides were mounted in ProLong antifade Gold containing DAPI (Life Technologies). Frozen tissue section (8 µm) were fixed and stained as described for cells. Slides were imaged using an Olympus IX81 inverted confocal microscope and analyzed using Olympus FluoView 3.0 and quantified using ImageJ.
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3

Spectroscopic Analysis and Purification Techniques

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NMR spectra were recorded on a Bruker Advance 400 spectrometer at 400/100 MHz (Bruker, Fällanden, Switzerland). Mass spectra were obtained on LCQ mass spectrometers (Thermo, West Palm Beach, FL, USA). An Agilent 1120 HPLC system (Agilent, Santa Clara, CA, USA), with RF C18 columns (10.0 × 250 mm, 5 μm, for preparative HPLC; 4.6 × 150 mm, 3.5 μm, for analytic HPLC), was used in the studies. For column chromatography, a silica gel 60 (Merck, Darmstadt, Germany) column and a Sephadex LH-20 (GE healthcare, Uppsala, Sweden) column were used. TLC analyses were performed with pre-coated silica gel 60 F254 plates (Merck, Darmstadt, Germany). The fluorescent microscope pictures were obtained on an Olympus IX 81 inverted confocal microscope (Olympus, Tokyo, Japan). All general chemical reagents were purchased from Sigma-Aldrich or Fisher Scientific.
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4

Fluorescence Microscopy of Protein Droplets

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Fluorescence
microscopy imaging of protein droplet formation was performed at ambient
temperature (approximately 22 °C) on an Olympus IX81 inverted
confocal microscope (Olympus Life Science; Tokyo, Japan) equipped
with a Yokogawa CSU-X1 spinning disk, mercury lamp, 488 and 561 nm
laser launches, iLas-targeted laser system for photobleaching and
an iXon3 EMCCD camera (Andor; Belfast, UK). Multidimensional acquisition
was controlled by MetaMorph software (Molecular Devices; Downingtown,
PA). Samples were illuminated using a 488 nm laser and imaged through
a 100×/1.4 NA oil-immersion objective. To image in vitro droplet
formation, proteins were thawed at 50 °C, diluted to 4 μM
in a buffer containing 150 mM NaCl and 20 mM Tris-HCl (pH 8.5 unless
otherwise specified), and placed on custom-fabricated acrylic gasket
chambers adhered to glass coverslips.
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5

Visualizing Neuropeptide Expression and Localization in C. elegans

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ASI::neuropeptide::gfp/mCherry transgenes were constructed by PCR fusion, as described above. To co-localize NLP-9 and RAB-3, two different ASI promoters were used; gpa-4::nlp-9::gfp and srg-47::mCherry::rab-3 and co-injected into nlp-9 null animals. A similar approach was used to co-localize NLP-9 and NLP-14 using srg-47::nlp-9::mCherry and gpa-4::nlp-14::gfp. Animals were immobilized in 20 mM sodium azide, mounted on 3% agarose pads and then imaged for GFP and mCHERRY using sequential scanning. All microscopy was performed on an Olympus IX81 inverted confocal microscope.
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6

Immunostaining of Zebrafish Hindbrain

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alx1;alx3/+ incross progeny were fixed at 2 dpf in 4% paraformaldehyde (PFA)/PBS overnight. Their trunk/tail portions were reserved for genotyping and the heads were exposed to 1% KOH/6% H2O2 to remove pigmentation and washed with PBST-X (1X PBS with 0.5% TritonX-100), followed by a 5-min proteinase-K (1:5000) treatment and 30-min 4% PFA/PBS post-fix at room temperature. Embryos were blocked with PBSTD-X (1X PBST, 1% DMSO, 10% BSA, 10% goat serum) for 2 h, at room temperature, incubated with mouse-anti-zn5 primary antibody (Zebrafish International Resource Center A28175, 1:100) and then Alexa-488-conjugated goat anti-mouse secondary antibody (Invitrogen AB_10013770, 1:500). Nuclei were labeled with DAPI (Molecular Probes; 1:5000). For imaging, embryos were mounted in VectaShield (Vector laboratories) and imaged on an Olympus IX81 inverted confocal microscope with the Fluoview 1000 confocal package, using a 60x water immersion objective (NA 1.10).
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7

Mitochondrial Activity Imaging in Ovaries

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Mitochondrial activity was studied using the fluorescent dye JC-1 (5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolcarbocyanine iodide), which acts as a marker of mitochondrial activity and allows changes in the electrochemical potential of inner mitochondrial membrane to be detected. Dissected ovaries (1mm long, less than 0.5 mm thick) were rinsed in PBS and immersed in a solution with the JC-1 (1mg/ml DMSO) (Sigma) in PBS (10μl JC-1 in 2 ml PBS for 60 minutes). Both monomeric (excitation at 488nm, emission 500–550nm) as well as aggregation (excitation 488 nm, emission at 575–620nm) were registered using an Olympus FV1000 confocal system combined with an Olympus IX81 inverted confocal microscope with a 60x PlanApo water objective. The images were analyzed using the ImageJ program. Image segmentation was performed using the Multi-Otsu threshold plug-in for the ImageJ program. In order to perform the image segmentation the histogram of each image was first extended to saturate the gray scale. Then, the images were filtered using a median filter (r = 0.5). Afterwards 12-bit images were converted to an 8-bit gray scale. An algorithm then attributed pixels to the appropriate class of luminosity (255 steps of luminosity) which was arbitrarily divided into: class 1: 1 to 50; class 2: 51 to 100; class 3: 101 to 150; class 4: (the brightest): 151 to 255.
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8

Assessing Mouthpart Sclerotization and Resilin

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The labellum and prestomal teeth of M. domestica, Sc. Stercoraria, St. calcitrans, and Sa. Bullata were used to assess the extent of sclerotization and the possible presence of the elastomeric protein resilin. The labellum was removed with a razorblade and placed into a droplet of glycerol on a glass slide, which was then manipulated with insect pins to expose the prestomal teeth. A high-precision cover slip (12 mm diameter, thickness no. 1.5 H, Neuvitro Corporation, USA) was placed on top. The autofluorescence of mouthpart structures was studied with an Olympus IX81 inverted confocal microscope and the CY3 (531–540 nm excitation, 593–640 nm emission), DAPI (377–360 nm excitation, 447–460 nm emission), and GFP (469–535 nm excitation, 525–639 nm emission) filters. Mouthparts were imaged with autoexposure settings and a 15-slice Z-stack in Olympus cellSens software. Structures that appeared red indicated a high level of sclerotization, green indicated weak levels of sclerotization, and structures that had blue autofluorescence indicated the presence of resilin [27 (link)].
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9

Quantifying Phospho-Histone H3 in Cells

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Cells expressing p35 and CDK5 (WT, S47A or S47D) were fixed with 4% paraformaldehyde and permeabilized (0.2% TX100 in PBS) for 20 min at room temperature. Cells were then blocked (1% BSA and 0.2% TX100 in PBS) followed by subsequent incubations with the primary (anti-phospho Histone H3; 1:500 dilution in the blocking buffer) and secondary antibody. Cells were mounted on glass slides using the ProLong Gold Antifade Mountant with DAPI. Images were taken using the Olympus IX81 inverted confocal microscope with the 40X oil immersion objective. The images were analyzed using ImageJ.
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10

Analyzing Myosin II B Dynamics in MEFs

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MEFs were seeded on poly L-lysine coated glass coverslips (8×104 cells/6-well plate/coverslip) for 24 h, washed and starved for 18 h. WNT9B (500 ng/ml) was added at time 0 and cells were incubated at 37°C for 30, 60, and 120 min. Cells were fixed in 10% formalin solution (Sigma-Aldrich) at room temperature (RT), permeabilized with 0.2 % Triton X-100 in PBS, blocked in 5% BSA, 0.1% Tween/Tris-buffered saline and incubated with rabbit α-Myosin II B (Sigma-Aldrich, 1:200) in blocking buffer at RT for 1 hr. Cells were washed with PBS and incubated with donkey anti-rabbit Alexa 568 secondary antibody (Molecular Probes, 1:2000) and phalloidin coupled to Alexa 488 (Molecular Probes, 1:40) for 1 h at RT. DNA was stained with 5 μg/ml DAPI for 10 min. Coverslips were mounted with ProLong (Molecular Probes), and cells were imaged using an Olympus IX81 inverted confocal microscope. Images were analyzed by the Olympus Fluoview software.
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