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16 protocols using f4 80 apc cy7

1

Intracellular Staining for dsRNA in BAL Cells

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For the detection of intracellular staining for dsRNA, BAL cells were collected after LC. The cells were fixed, permeabilized, and subjected to intracellular staining(13 (link)). The following primary antibodies were used: J2 (®English & Scientific Consulting, Bt. Szirák, Hungary CD11c-FITC and F4/80-APC-Cy7 (® BioLegend, San Diego, CA) (14 (link)). Data were analyzed using Flow Jo software.
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2

Immune Cell Characterization in TRPV5 Knockout Mice

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Splenocytes and thymic cells were isolated from WT and TRPV5 KO mice. Spleens were cut into small pieces and incubated in RPMI with collagenase (1 mg/ml, Roche) and DNase (0.1 mg/ml, Sigma) at 37°C with occasional stirring for 20 min to extract various innate immune cells. Single-cell suspensions were obtained and incubated with various antibodies to distinguish cell populations for 1 h at 4°C and washed three times with PBS. Splenocytes and thymic cells were immunostained with CD4–PE (1 µg/ml, Biolegend), CD8–APC (1 µg/ml, Biolegend), and CD3–Fluorescein isothiocyanate (FITC) (2.5 µg/ml, Invitrogen) to compare T-cell populations. Innate immune cell phenotyping of splenocytes consisted of immunostaining with CD11b–PB (2.5 µg/ml, Biolegend), CD11c–APC (1 µg/ml, Biolegend), CD64–PE (1 µg/ml, Biolegend), F4/80-APC/Cy7 (1 µg/ml, Biolegend), MHC Class II–BV605 (1 µg/ml, Biolegend), LY6C–AF700 (2 µg/ml, Biolegend), GR1–FITC (2 µg/ml, Biolegend), and NK1.1–PE/Cy7 (1 µg/ml, Biolegend). Cells were fixed after washing in 4% paraformaldehyde for 10 min at 4°C followed by three washes with PBS. Cells were analyzed on an LSR Fortessa, and data were analyzed using FlowJo (BD).
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3

Multi-parameter Immune Cell Profiling

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Surface staining was performed in ice-cold PBS with 2% FCS for 15 min in the presence of FcγRII/III blocking antibody (CD16/32). The cells were surface-stained with the relevant antibodies in PBS + 2% FBS for an additional 20 min at 4 °C.
The following fluorochrome-conjugated monoclonal antibodies were used for cell phenotyping: B220 APC (clone RA3-6B2), CD11b PE (clone M1-70), CD138 PE (clone 281-2), CD19 FITC (clone 6D5), CD19 BV421 (clone C068c2), CD206 PE-Cy7 (clone C068c2), CD4 PE (clone RM4-5), CD5 PE-Cy7 (clone 53–7.3), CD8a Ly-2 APC/Fire 750 (clone 53–6.7), F4/80 APC-Cy7 (clone BM8), F4/80 APC (clone BM9), IA-d Alexa Fluor 647 (clone 39–10-8), SIRPα APC (clone 15–414) from Biolegend and CD3 eFlour 660 (clone 17A2). Viability dye eFluor 780 reagent (eBioscience, USA) or propidium iodide were used for live/dead cell discrimination.
Flow cytometry was conducted on a FACSCanto II flow cytometer or FACSAria III Cell Sorter (BD Biosciences), and data analysis was performed using the FlowJo software (Tree Star, Inc., Ashland, OR, USA).
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4

Flow Cytometric Analysis of Adipose Tissue

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Stromal vascular fraction (SVF) was obtained from pgWAT by treatment with 2 mg/mL collagenase (Sigma) for 45 min at 37 °C. The isolated SVF was resuspended in cold Hank’s balanced salt solution (HBSS) with 2% fetal bovine serum (FBS). Cells were incubated with CD45-PE-Cy7 (eBiosciences), F4/80-APC-Cy7 (BioLegend), CD206-Alex647 (Serotec, Inc.) and CD11c-PE (BD Pharmingen) antibodies for 30 min in HBSS containing 2% FBS on ice and then washed and resuspended in solution with Sytox Blue (Thermo Scientific). Cells were analyzed on a BD FACSAria cell sorter after selection by forward scatter and side scatter, followed by exclusion of dead cells with Sytox Blue staining, and analyzed for cell-surface markers using FlowJo software (Tree Star). M1 or M2 macrophages were identified as F4/80-positive/CD11c-positive/CD206-negative or F4/80-positive/CD11c-negative/CD206-positive cells, respectively. The data are shown as the percentage of M1 and M2 macrophages. For sorting preadipocytes, endothelial cells and macrophages, cells were incubated with CD31-PE-Cy7 (eBiosciences), F4/80-APC (eBiosciences), and Sca-1 FITC (eBiosciences) antibodies for 30 min in HBSS containing 2% FBS on ice and then washed and resuspended in solution with Propidium Iodide Staining Solution (Sigma). Gating strategies are presented in Supplementary Figure 12 and Supplementary Figure 13.
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5

Intracellular Staining of BAL Cells

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BAL cells were collected after LC. The cells were fixed, permeabilized, and subjected to intracellular staining. The following primary antibodies were used; MyD88 (R&D system, Minneapolis, MN) CD11c-FITC, TLR3-PE, and F4/80-APC-Cy7 (® BioLegend, San Diego, CA). Data were analyzed using Flow Jo software.
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6

Flow Cytometric Analysis of Adipose Tissue

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Stromal vascular fraction (SVF) was obtained from pgWAT by treatment with 2 mg/mL collagenase (Sigma) for 45 min at 37 °C. The isolated SVF was resuspended in cold Hank’s balanced salt solution (HBSS) with 2% fetal bovine serum (FBS). Cells were incubated with CD45-PE-Cy7 (eBiosciences), F4/80-APC-Cy7 (BioLegend), CD206-Alex647 (Serotec, Inc.) and CD11c-PE (BD Pharmingen) antibodies for 30 min in HBSS containing 2% FBS on ice and then washed and resuspended in solution with Sytox Blue (Thermo Scientific). Cells were analyzed on a BD FACSAria cell sorter after selection by forward scatter and side scatter, followed by exclusion of dead cells with Sytox Blue staining, and analyzed for cell-surface markers using FlowJo software (Tree Star). M1 or M2 macrophages were identified as F4/80-positive/CD11c-positive/CD206-negative or F4/80-positive/CD11c-negative/CD206-positive cells, respectively. The data are shown as the percentage of M1 and M2 macrophages. For sorting preadipocytes, endothelial cells and macrophages, cells were incubated with CD31-PE-Cy7 (eBiosciences), F4/80-APC (eBiosciences), and Sca-1 FITC (eBiosciences) antibodies for 30 min in HBSS containing 2% FBS on ice and then washed and resuspended in solution with Propidium Iodide Staining Solution (Sigma). Gating strategies are presented in Supplementary Figure 12 and Supplementary Figure 13.
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7

Isolation and Characterization of Tumor-Infiltrating Leukocytes

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Tumor tissue was washed several times in PBS, finely chopped with a razor blade and digested in HBSS containing 1mg/ml Collagenase type IV (Sigma-Aldrich, C5138),100ug/ml DNase I (Sigma-Aldrich, D5319), and 5% fetal calf serum for 10min at 37 ℃ with gentle rotation in shaker (150 rpm). Leukocytes were isolated from the supernatant with Percoll (Solarbio, P8370) gradient separation method in which the cells were responded in 40% Percoll and underlayered with 80% Percoll followed by centrifugation at 2500 rpm for 20min. For surface marker staining, cells were washed with PBS containing 0.5% BSA and stained with CD45-BV605 (103,140, Biolegend), F4/80-APC-cy7 (123,117, Biolegend), CD11b-APC (17-0112-82, eBioscience), CD11c-PE (12-0114-81, eBioscience), CD206-BV421 (141,717, Biolegend), Ly6G-PE-cy7 (127,617, Biolegend), CD3e-PerCP (100,325, Biolegend), CD4-AF700 (100,430, Biolegend) and CD8-FITC (11-0081-82, eBioscience) for 30 min in the dark. Serum levels of Data acquisition were performed on an LSR Fortessa instrument (BD Biosciences) and analyzed by using FlowJo software (Treestar) and SPSS26.0. IL-18 and IFN-γ were detected by enzyme-linked immunosorbent assay (ELISA, MultiScience).
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8

Flow Cytometric Analysis of OVA-DQ Phagocytosis

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Splenocytes were plated in a 96-well plate (1 × 106 cells/well) and OVA-DQ (DQ Ovalbumin, Thermofisher) was added at a concentration of 100 µg/mL for 30 min to allow its phagocytosis by APC. OVA-DQ was then washed and its processing by macrophages (F4/80+, CD45+) and dendritic cells (CD45+, CD11c ) analyzed 3 h later by flow cytometry (Digested fragment have BODIPY dye). The following antibodies were used: CD11c-APC (Biolegend), F4/80-APC/Cy7 (Biolegend), CD45-PE-Cy7 (Biolegend), 7AAD (Biolegend).
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9

Identifying M1 and M2 Macrophages

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SVF was obtained from pgWAT by treatment with 2 mg/mL collagenase (Sigma) for 45 minutes at 37°C. The isolated SVF was resuspended in cold Hank’s balanced salt solution (HBSS) with 2% fetal bovine serum (FBS). Cells were incubated with CD45-PE-Cy7 (eBiosciences), F4/80-APC-Cy7 (BioLegend), CD206-Alex647 (Serotec, Inc.) and CD11c-PE (BD Pharmingen) antibodies for 30 minutes in HBSS containing 2% FBS on ice and then washed and resuspended in solution with Sytox Blue (Thermo Scientific). Cells were analyzed on a BD FACS Aria cell sorter after selection by forward scatter and side scatter, followed by exclusion of dead cells with Sytox Blue staining, and analyzed for cell-surface markers. M1 or M2 macrophages were identified as F4/80+/CD11c+/CD206- or F4/80+/CD11c-/CD206+ cells, respectively. The data are shown as the percentage of M1 and M2 macrophages.
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10

Flow Cytometry Analysis of Macrophages

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Flow cytometry experiments were performed on a CytoFLEX V2-B4-R2 Flow Cytometer (8 Detectors, 3 Lasers) (Beckman Coultier, Germany). In short, cells were harvested as described above and subsequently stained with the appropriate antibodies and dyes. For flow cytometry experiments, BMDMs or peritoneal lavage was harvested. F4/80 APC-Cy7 (Cat nr. 123113, Biolegend, UK) and CD11b PE-Cy7 (Cat nr. 101215, Biolegend, UK) positive cells were considered macrophages.
For measuring intracellular thiol levels, Thioltracker dye (T10095, Thermo Fisher Switzerland), was used according to manufacturer’s directions.
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