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16 protocols using dmi4000 fluorescence microscope

1

Double-Labeled Immunohistochemistry of DRG Neurons

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Rats were perfused with 4% paraformaldehyde after they were anesthetized with isoflurane for the preparation of double-labeled immunohistochemistry, as described previously (Xu et al., 2013 (link); Wang et al., 2013 (link)). L4 and L5 DRG neurons were removed, post-fixed, and dehydrated before frozen sectioning at 16 μm. After the sections were blocked for 1–2 h in 0.01 M PBS containing 10% goat serum and 0.3% Triton X-100 at room temperature, they were incubated with the following primary antibodies over one or two nights at 4°C. The antibodies and reagents included rabbit anti-Nav1.3 (1:800, Abcam), mouse anti-NF200 (1:200, Abcam), biotinylated IB4 (1:100, Sigma), mouse anti-CGRP (1:50, Abcam), mouse anti-Gelsolin (GS; 1:200, R&D), rabbit anti-NF200 (1:200, Abcam), rabbit anti-CGRP (1:50, Abcam), and rabbit anti-Gelsolin (GS; 1:200, R&D). The sections were then incubated with either goat anti-rabbit antibody conjugated to Cy3 (1:200, Jackson Immunity Research, West Grove, PA, USA) or goat anti-mouse antibody conjugated to Cy2 (1:200, Jackson Immunity Research) for 2 h in the incubator at 37°C. All immunofluorescence-stained images were examined using a Leica DMI4000 fluorescence microscope and captured with a DFC365FX camera (Leica, Germany). Double-stained neurons were quantified manually or by using NIH Image J Software.
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2

Calcium Imaging of Islet Cells

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Calcium imaging was performed similar as previously reported. 4 (link) Clusters were attached to Matrigel, incubated with 20 μM Fluo4-AM (Life Technologies, F14217) in KRB buffer with 2 mM glucose for 45 minutes, washed, and incubated at sequential treatments of 2 mM glucose, 20 mM glucose, 2 mM glucose, and 20 mM glucose plus 30 mM KCl in KRB buffer. Fluo4-AM fluorescence was imaged using a Leica DMI4000 fluorescence microscope and quantified with ImageJ.
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3

Mitochondrial Membrane Potential and ROS Measurement

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Mitochondrial membrane potential (MMP) and ROS production were measured as in Leanza et al.19 (link) Briefly, MMP was monitored using tetramethylrhodamine methyl ester (TMRM; 20 nM), while ROS production was assayed using MitoSOX (1 μM). B cells either from CLL patients or from healthy subjects were incubated for 20 min at 37 °C. After incubation, the indicated compounds were added and the decrease in TMRM fluorescence or the increase in MitoSOX fluorescence was measured by FACS. HMLE TWIST cells (0.07 × 106 cells/well) were seeded in a 12-well plate in 1 ml of their culture medium. The day after, cells were incubated with TMRM 20 nM and MitoSOX 1μM in HBSS (Life Technologies, Thermo Fisher Scientific Inc) for 20 min at 37 °C in the dark. After incubation, compounds were added as indicated in the figure and the decrease in TMRM fluorescence or the increase in MitoSOX fluorescence was measured by a Leica DMI 4000 fluorescence microscope at the indicated time points.
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4

Intranasal Transport of OVA-NP

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To observe the transport of OVA-NP across the nasal mucosa, each rat received 50 μl of FITC-labeled OVA or OVA-NP (5 mg/ml) intranasally via a polyethylene tube attached to a microsyringe. At 10 min, 30 min, 1 h, 2 h and 4 h after administration, the rats were sacrificed by anesthesia and perfused with physiological saline followed by 4% paraformaldehyde. The nasal cavity of these rats was carefully excised, fixed for 24 h, decalcified with EDTA, dehydrated in sucrose solution, embedded in OCT (Sakura Finetek, USA) and sectioned on a freezing microtome. After staining with DAPI, the sections were observed under a DMI 4000 fluorescence microscope (Leica, Germany).
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5

Immunofluorescence Staining of Dispersed Cells

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Measurements were performed as we previously described (Velazco-Cruz et al., 2019 (link)). Stage 6 clusters were single-cell dispersed with trypLE, plated overnight, and fixed with 4% paraformaldehyde (Electron Microscopy Science; 15714) for 30 min at RT. Samples were treated for 30 min with blocking/permeabilizing/staining solution (5% donkey serum (Jackson Immunoresearch; 017-000-121) and 0.1% Triton X-100 (Acros Organics; 327371000) in PBS). Samples were then incubated overnight at 4°C with primary antibody diluted in staining solution, incubated 2 hr at 4°C with secondary antibodies diluted in staining solution, and stained with DAPI for 5 min. Nikon A1Rsi confocal microscope or Leica DMI4000 fluorescence microscope were used to take images. The antibodies used are listed in Table S4.
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6

Immunofluorescence Staining of Dispersed Cells

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Measurements were performed as we previously described (Velazco-Cruz et al., 2019 (link)). Stage 6 clusters were single-cell dispersed with trypLE, plated overnight, and fixed with 4% paraformaldehyde (Electron Microscopy Science; 15714) for 30 min at RT. Samples were treated for 30 min with blocking/permeabilizing/staining solution (5% donkey serum (Jackson Immunoresearch; 017-000-121) and 0.1% Triton X-100 (Acros Organics; 327371000) in PBS). Samples were then incubated overnight at 4°C with primary antibody diluted in staining solution, incubated 2 hr at 4°C with secondary antibodies diluted in staining solution, and stained with DAPI for 5 min. Nikon A1Rsi confocal microscope or Leica DMI4000 fluorescence microscope were used to take images. The antibodies used are listed in Table S4.
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7

Investigating cancer cell migration and trans-endothelial invasion

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A total of 50′000 SK-BR-3 cells were plated into Boyden-Chamber inserts with 8 μm pore size (BD Falcon, Corning Tewksbury MA, USA) in 200 μl M199 (Sigma Aldrich, Buchs, Switzerland) 2% FBS medium; the bottom chamber was filled with 800 μl of M199 20% FBS medium. After a migration time of 18 h, the cells were fixed with 4% paraformaldehyde in PBS. Cells that had not crossed the membrane were removed, and cells on the bottom of the insert membrane were stained with DAPI (1 μg/ml), visualized with a Leica DMI4000 fluorescence microscope and quantified using ImageJ software. The trans-endothelial migration assay was performed as previously described [25 ]. Briefly, a total of 15′000 CellTrace CFSE (Invitrogen, Thermo Fisher Waltham, MA, USA)-labelled SK-BR-3 cells were seeded onto a confluent HUVEC monolayer and incubated over 48 h in 5% CO2 at 37 °C without a serum gradient. After removal of non-migrated cells, cells that crossed the HUVEC monolayer were fixed with 4% paraformaldehyde, visualized and quantified as described above. Immunofluorescence and immunoblotting were performed as previously described [26 (link)]. All experimental conditions were tested and analysed in three replicates and each condition was tested in biological triplicates.
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8

Functional Characterization of SC-Islets and Human Islets

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SC-β cells and human islets were retrieved from the engrafted
devices as mentioned above. The SC-β cells or human islets were extracted
as mentioned before, shipped overnight, and cultured in S6 or human islet media
(CMRLS with 10% FBS) for recovery of SC-islets or human islets, respectively.
The clusters were single-cell dispersed with TrypLE for 10 min and seeded in
Matrigel-coated 96 well plates (Cellvis, 963-1.5H-N) overnight for attachment in
their respective recovery media. Cells were washed with 2 mM glucose KRB and
incubated with 20 μM Fluo-4 AM (Invitrogen; F14201) in 2mM glucose for 45
min at 37°C in incubator. Next, the cells were washed with 2 mM glucose
KRB and challenged with 2 mM glucose KRB, 20 mM glucose KRB, and 20mM glucose 30
mM KCl KRB, sequentially. Images were taken every minute using a Leica DMI4000
fluorescence microscope and calcium flux was calculated with ImageJ.
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9

Immunohistochemical Characterization of DRG Neurons

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Immunohistochemistry was performed as reported previously [30 (link)]. Briefly, the mice were transcardially perfused with 30 ​ml of 0.01 ​M phosphate-buffered saline (PBS) and then with 50 ​ml of 4 ​% paraformaldehyde in 0.1 ​M phosphate buffer (pH 7.4) after deep sevoflurane anesthesia. The DRGs were collected, postfixed for 6 ​h in fixative solution, and then cryoprotected overnight at 4 ​°C in 30 ​% sucrose in 0.1 ​M phosphate buffer. On a cryostat, DRGs were sectioned to a thickness of 20 ​μm. The sections were blocked for 1 ​h at room temperature with 5 ​% goat serum and 0.5 ​% Triton X-100 in PBS before being incubated overnight at 4 ​°C with anti-Rbfox1 (1:250, Abcam), anti-NeuN (1:250, Cell Signaling Technology), anti-glutamine synthetase (1:500, Abcam), anti-NF200 (1:250, Abcam), anti-CGRP (1:200, Abcam), and biotinylated IB4 (1:250, Sigma). On the second day, the sections were incubated with species-appropriate secondary antibody Alexa Fluor® 568 (1:200, Abcam) or Alexa Fluor® 488 (1:250, Abcam) at room temperature for 2 ​h. The images were captured using a DMI 4000 fluorescence microscope (Leica) with a DFC365 FX camera (Leica) and then processed with ImageJ software.
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10

Immunohistochemical Analysis of Sciatic Nerve and Muscle

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Immunohistochemistry was performed as described previously47 (link). Three rats from each
treated group as indicated above (four groups; N = 3 rats/group) were
anesthetized with isoflurane and perfused with 300 ml of 4% paraformaldehyde
in 0.1 M phosphate-buffered saline (PBS; pH 7.4). After perfusion, sciatic
nerves or adjacent muscles were dissected, postfixed at 4°C for 4
hours and cryoprotected in 30% sucrose overnight. The transverse or
longitudinal sections were cut on a cryostat at a thickness of 20 μm
and collected from each tissue by grouping every third sections. The
sections were first blocked for 1 hour at 25°C in 0.01M PBS
containing 5% goat serum and 0.3% Triton X-100 and then incubated overnight
at 4°C with mouse anti-myelin basic protein (MBP; RRID: AB_10120129;
catalog number: SMI-99P; lot number: 808401. 1:500; BioLegend, San Diego,
CA, USA)17 (link) or rabbit
anti-CD68 (RRID: AB_10975465; catalog number: ab125212; lot number: 43780.
1:800; Abcam, Cambridge, MA, USA)56 (link). The sections were finally incubated with goat
anti–mouse or anti-rabbit antibody conjugated to Cy2 or Cy3 (1:500;
Jackson ImmunoResearch, West Grove, PA, USA) for 2 hours at room
temperature. Immunofluorescence-labeled images were randomly taken using a
Leica DMI4000 fluorescence microscope with a DFC365FX camera (Leica,
Germany). At least 5 sections per rat (15 sections/group) were examined.
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