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38 protocols using fv31s sw software

1

Two-Photon Imaging of ZART T Cell Calcium Signals

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ZART T cells were cultured in complete RPMI without phenol red supplemented with 2% heat-inactivated fetal bovine serum, 50 U mL−1 penicillin, 50 μg mL−1 streptomycin, 1 mM sodium pyruvate, 10 mM HEPES and 50 μM 2-mercaptoethanol and maintained at 37°C. Cells were placed in a petri dish above the TEMPO device. In vitro two-photon imaging of calcium signals was performed with an upright microscope (FVMPE-RS, Olympus), a 25×/1.05 numerical aperture, water-dipping objective and using FV31S-SW software (Olympus). Excitation was provided by an Insight DeepSee dual laser (Spectra-Physics) tuned at 880 nm and image acquisition was performed using a resonant scanner (0.067 μs/pixel, 10 integrations). The following filters were used for fluorescence detection CFP:483/32; FRET: 542/27. Photoactivation was performed with the TEMPO device using a 5s pulse of blue-LED illumination. Time-lapse movies were processed and analyzed using Fiji.27 (link) Calcium was calculated after cell tracking (surface tracking mode, Imaris 7.4.2 software) by dividing FRET signals by CFP signals in individual cells.
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2

Real-Time RBC Calcium Imaging

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At room temperature, diluted RBC solution (approximately 0.025% hematocrit) was injected into a homemade cell chamber. RBC fluorescence imaging was performed on an Olympus FV3000RS confocal microscope with an IX83 body combined with an FV31-HSU Hybrid Scanning Unit (Tokyo, Japan). Calcium mobilization can then be imaged with laser illumination (Ex 490/Em 525), where 15% power (maximum power: 50 mW) was used in the laser diode. Bright-field imaging was performed simultaneously on the same microscope. Images were illuminated using the silver-coated resonance scanning mirrors at 10 fps and 512 × 512 frame size, controlled with Olympus CellSens Dimension software. Light signals were collected via an Olympus 40 × /0.95 UPLXAPO (Air) objective. Two channels inside the InGaAsP high-sensitivity detector with quantum efficiency > 45% were used to concurrently acquire images of both bright-field light and fluorescent light. The acquisition was performed with averaging every two frames. No significant photobleaching effect was observed during the time interval used in the experiments. All images were then collected with the Olympus FV31S-SW software.
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Multicolor Fluorescence Imaging Protocol

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The eGFP fluorophore was excited at 488 nm and emission was detected at 490–540 nm. The RFP fluorophore was excited at 561 nm and emission was detected at 560–620 nm. The images were taken by a laser scanning confocal microscope FV3000 (Olympus) and processed with FV31S‐SW software (Olympus).
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4

Two-Photon Imaging of Cells Treated with IFN-γ

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Plastic dishes were coated with poly-d-lysine (Sigma, 0.01% dilution in PBS) for 30 min at 37 °C. Cells were incubated in the culture dishes in complete RPMI without phenol red containing or not IFN-γ (50 ng ml−1) for the indicated time before being subjected to imaging. In vitro two-photon imaging was performed using an upright microscope (FVMPE-RS, Olympus), a ×25/1.05 numerical aperture, water-dipping objective combined with an objective heater and using FV31S-SW software (Olympus). An Insight DeepSee dual laser (Spectra-Physics) tuned at 880 nm was used for excitation. The following filters were used: CFP (483/32) and YFP (542/27). Timelapse sequences were typically created by scanning a 25-μm-thick tissue volume using 5-μm z-steps and 30-s intervals.
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5

Microscopic Analysis of Starch and Protein

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The method of Silva et al. [16 (link)] was slightly modified, the 5 mm FOCN was wrapped in Leica gel and cut into 10 pieces on a frozen microtome. The slices were transferred onto a glass slide and stained with 0.28 g/L fluorescein isothiocyanate (preferentially stained starch) solution for 10 min, followed by staining with 0.013 g/L Rhodamine B (preferentially stained protein) solution for 5 min. The slices were then rinsed with ionized water for 10 s and the excess liquid was absorbed with filter paper. Finally, the stained sections were observed using CLSM with a set of light-emitting diode filters. The excitation/emission wavelength of fluorescein isothiocyanate is 488/518 nm, and the excitation/emission wavelength of Rhodamine B is 568/625 nm. The FOCN slice should be photographed using a 40× objective lens combined with an Olympus FV3000 camera (Olympus Corporation, Tokyo, Japan) and FV31S-SW software (available at https://lifescience.evidentscientific.com.cn/zh/downloads/detail-iframe/?0[downloads][id]=847252002 (accessed on 2 January 2024)).
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6

Confocal Microscopy Analysis of Epidermal Sheets

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A confocal laser scanning microscope (Olympus, FLUOVIEW-FV 3000, equipped with OBIS lasers: 405, 488, 561, 640 nm and ×20, ×40, or ×60 UPlanXApo objectives) and Olympus FV31S-SW software were used in this study. Images were acquired with ×20 objective as Z-stack from four fields of view (FOVs) per epidermal sheet from four different donors and analyzed using ImageJ Fiji software (Schindelin et al., 2012 (link)). The measurement of the integrated density from the region of interest (ROI) was based on Z-projections with max intensity of manually thresholded images (analogue parameters were used for all analyzed images). Between 100 and 200 ROIs (rLCs) were analyzed per four FOVs.
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7

Visualizing Rab37-PD-1 Colocalization

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The time-lapse experiments were captured by Olympus FV3000 confocal microscope and used FV31S-SW software (Olympus) to analyze the co-localization of Rab37 and PD-1 in Rab37-WT 293T cells. Rab37-RFP WT and PD-1-GFP were transfected and expressed for 16–18 h in 293T cells. The Rab37-RFP and PD-1-GFP signals in 293 T cells were recorded through real-time live image and video through the 100× lens of the microscope. Quantification was done using Image J software.
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8

Live Cell Imaging of Gene Expression

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Live imaging was performed using a confocal inverted microscope (IX83, OLYMPUS) equipped with an Olympus UPLSAPO 20×/0.75 dry objective combined with a stage‐top incubation chamber (IX3WX; TokaiHit). For high resolution live cell imaging, stacks of optical section images (40 slices, 512 × 512 or 512 × 256 pixels for the x‐y plane and 2 µm for the z‐axis step) were acquired at 10, 20 or 60 min intervals over 4 days. For light irradiation control, we used Olympus FV31S‐SW software, which allows specification of the range, intensity, and interval of irradiation by LSM stimulation command. A 405 nm laser was used. The details of the irradiation conditions are shown in Table 1 and Figure 1e. A cell proliferation assay showed that, at the irradiation intensity needed to induce gene expression, the laser had little effect on the cell proliferation rate and thus was unlikely to cause cell damage (Figure S1).
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9

Imaging Facial Cartilage Development

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Fluorescent images were taken on an Olympus FLUOVIEW FV3000 confocal microscope
using FV31S-SW software (Olympus). Approximately 100 μm Z-stacks at
3.5-μm intervals were captured with an Olympus UPLXAPO 20X objective
lens, then were stacked into a single image. Facial cartilages were dissected
manually from Alcian Blue staining larvae and were flat-mounted for imaging with
an Olympus BX50 upright microscope using mosaic V2.1 software (Tucsen
Photonics). Any adjustments were applied to all panels using Adobe Photoshop
(Adobe Systems).
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10

DAPI/Phalloidin Staining of Cryostat Sections

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Histological investigation of the CGs and oothecae was validated by DAPI/phalloidin staining of cryostat sections as previously described (Zhu et al. 2020 ). The images were taken by an Olympus FluoView FV3000 confocal microscope and analyzed with FV31S-SW software (Olympus, Japan) (Zhu et al. 2020 ).
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