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Sodium citrate

Manufactured by Sarstedt
Sourced in Germany

Sodium citrate is a chemical compound with the formula Na3C6H5O7. It is a white crystalline powder that is soluble in water. Sodium citrate is commonly used as an anticoagulant in medical and laboratory applications, where it helps prevent the clotting of blood samples.

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12 protocols using sodium citrate

1

Isolation of Human Neutrophils

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Blood was drawn from healthy volunteers after the approval of the Ethics Committee of Ulm University (ethic decision number 459/18) and after obtaining written informed consent from the blood donors. Subjects were healthy males or females aged between 18 and 35 years without any signs of infection or other medical problems and under no medication. Human blood was drawn by peripheral venous puncture as described by the World Health Organization guidelines in phlebotomy [44 ] in monovettes containing 3.2% sodium citrate (Sarstedt, Nürnbrecht, Germany).
Neutrophils were isolated from human blood using the Ficoll-Paque (GE Healthcare, Uppsala, Sweden) density gradient centrifugation and subsequent dextran sedimentation as described previously [14 (link),15 (link),17 (link),18 (link)]. Following hypotonic lysis of the remaining erythrocytes and resuspension in Hank’s balanced salt solution with calcium and magnesium (HBSS, Gibco Thermo Fisher, Darmstadt, Germany) that was titrated to a pH of 7.3, the cell concentration was adjusted to 2 × 106 per milliliter.
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2

Blood Collection and Plasma Preparation

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Blood samples were collected within the first hour of patient admission (before coronary angiography) or during the visit of volunteers without CVD. All participants provided written informed consent prior to the collection of biological samples. The utilization of blood samples for research purposes was approved by the by the Interuniversity Committee of Ethics of Moscow State University of Medicine and Dentistry. We collected peripheral blood by intravenous withdrawal in vacuum tubes with sodium citrate as anticoagulant (Sarstedt, Nuembrecht, Germany, cat#05.1071.001). The first tube with blood was discarded because it contained platelets activated during venepuncture and skin fibroblasts. We prepared platelet-poor plasma less than 1 h after blood collection by double centrifugation at 3000 g for 15 min. Then, plasma was aliquoted to 300 μl, frozen at − 80 °C, and shipped on dry ice to the Section on Intracellular Interactions of the Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health (NICHD/NIH/DHHS) (Bethesda, MD, USA) for cytokine measurement.
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3

Quantifying Coagulation Factors: D-Dimer and Fibrinogen

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To measure coagulation activity in terms of the prothrombotic factors D-dimer and fibrinogen, venous blood was drawn into polypropylene tubes containing 3.8% sodium citrate (Sarstedt, Nümbrecht, Germany). Citrate tubes were immediately centrifuged for 20 min at 4°C at 2,000 g, and plasma was pipetted into aliquots. D-dimer was analyzed using a particle-enhanced immunoturbidimetric assay for the quantitative determination of D-dimers in human plasma (INNOVANCE® D-Dimer, Siemens Healthcare GmbH, Erlangen, Germany) on a Sysmex CS-5100 (Sysmex Europe, Norderstedt, Germany). Plasma fibrinogen levels were determined by a routine clotting assay applying standard quality procedures following the Clauss method. The intra- and inter-assay CVs were ≤ 7.9%.
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4

Neutrophil Transendothelial Migration Assay

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Peripheral blood was taken from healthy donors into Sarstedt monovettes containing sodium citrate (Sarstedt) and neutrophils were isolated as previously described (17 (link)). For transendothelial migration studies, A549 cells were grown on the basolateral aspect of permeable transwell inserts (0.4 μm pore size, 6.5 mm diameter) until they were confluent. Migration assays were performed as described elsewhere (17 (link)). In a subset of experiments, ADK A549 cells were inhibited by ITU for 30 min before the transepithelial migration assay was started.
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5

Plasma and Serum Preparation for Biomarker Analysis

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Peripheral venous blood was taken from all study participants during a routine clinic visit or at the time of hospitalization. For the preparation of plasma and its subsequent analysis, blood was collected in plastic tubes containing either lithium heparin (Sarstedt; catalog number 135469; for sEPCR, ADAM17, sE-selectin, TNFα, and CRP measurements) or EDTA (Sarstedt; catalog number 125312; for IL1β and VEGF measurements), or sodium citrate (Sarstedt; catalog number 125311; for protein C activity determination) as anticoagulants, as recommended by the manufacturer. Serum was prepared by allowing whole blood to clot for 2 h at room temperature. Plasma or serum were obtained by centrifugation at 3000× g for 10 min at room temperature. The supernatant was transferred to clean tubes, immediately divided into aliquots (500 µL), and frozen at −80 °C pending further analysis.
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6

Rivaroxaban Level Calibration and Verification

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The calibration of the medication and verification of the rivaroxaban level was performed before the start of the experiment in three animals. For this purpose, after induction of anesthesia with isoflurane (5% by volume), and the continuation of inhalation anesthesia with isoflurane (1.5–2%) and oxygen as a carrier gas, 1 mL of blood was collected from the caudal vein via a nasal mask via a puncture using a 23 G needle. During the experiment, 1 mL of blood was obtained via the puncture of the caudal vein under general anesthesia before surgery and before finalization. Blood samples were collected in microsample tube sodium citrate (3.2%, Sarstedt). Prothrombin time (PT) (Hemosil Readiplastin), fibrinogen (thrombin reagent), and rivaroxaban concentrations (HemosIL Liquid Anti-Xa Assay using rivaroxaban calibrators and controls) were determined by standard laboratory methods using the appropriate tests (all from Werfen, Germany) on an ACL-TOP550 (Werfen, Germany).
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7

Freshly Drawn Whole Blood Protocol

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Whole blood (WB) from different healthy volunteers was freshly drawn into Sarstedt Monovette® tubes containing 0.106 mol/l sodium citrate (Sarstedt AG, Nümbrecht, Germany) and used for experiments within 60 min after blood sampling. The blood sampling was approved by the ethics committee of the canton of Bern and all volunteers gave informed consent.
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8

Coagulation Factor Assessment Protocol

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Blood was collected by cardiac puncture into tubes containing 3.2% sodium citrate (9:1 v/v) (41.1506.002; Sarstedt, Nümbrecht, Germany). Samples were immediately centrifuged at RT to collect plasma. Plasma was stored at −80 °C until further use. Prothrombin time (PT) and activated partial thrombin time (aPTT) were assessed on an automated coagulation analyzer (CS-2100i) with reagents (PT-Innovin for PT and ActinFS for aPTT) and protocols from the manufacturer (Siemens, Marburg, Germany). Levels of factor V (FV), VII (FVII), and FVIII (FVIII) were determined on an automated coagulation analyzer (CS2100i) based on the one-stage clotting assay with factor-deficient plasma (Siemens, Marburg, Germany). Testing was performed in accordance with the protocols from the manufacturer (Siemens). Levels are denoted as percentages of standard human plasma (Siemens, Marburg, Germany).
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9

Plasma Extracellular Vesicle Isolation

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Peripheral blood was collected by intravenous withdrawal in vacuum tubes with sodium citrate as anticoagulant (Sarstedt, Nuembrecht, Germany, cat#05.1071.001). The first tube with blood was discarded because it contained platelets activated during venipuncture and skin fibroblasts. Platelet poor plasma (PPP) was prepared within less than 1 h after blood collection by centrifugation at 3,000 g for 15 min. Then, plasma was aliquoted in 600 μl fractions and frozen at −80⁰C. EV isolation with magnetic nanoparticles, in contrast to gradient centrifugation, allowed us to use one centrifugation instead of two [29 (link)] to avoid additional disturbance of the preparation. Indeed, the second centrifugation removes only a small fraction of particles between 300 and 500 nm (Fig.S2), and thus was purposefully avoided in our protocol.
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10

Pretreatment Blood Sampling Protocol

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Resting blood samples were taken prior to HD initiation on the second or third HD shift of the week (i.e. after the short inter-dialytic break). 30 mL of venous blood was drawn directly into monovettes containing either K3EDTA or sodium citrate (Sarstedt, Nümbrecht, Germany). sodium citrate-treated blood was centrifuged at 2500 g for 15 min at 20 °C, after which the top 90% was removed and centrifuged again at 2500 g for 15 min at 20 °C—the supernatant (platelet-free plasma) was then removed and stored in 250 µl aliquots at -80 °C for future MP analysis. K3EDTA-treated blood was centrifuged at 2500 g for 10 min at 4 °C and the supernatant was separated and stored in 500 µl aliquots at − 80 °C for future cytokine and chemokine analysis.
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