The largest database of trusted experimental protocols

5 protocols using ab9475

1

Multiparametric Profiling of SARS-CoV-2 Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
All reagents were purchased from Sigma (St. Louis, MO) unless indicated otherwise. Dyes and secondary antibodies were obtained from Thermo-Fisher (Waltham, MA). RNAscope 2.5 HD Detection of s-sense COVID-19 for RNA detection was used (Hayward, CA). Antibodies for macrophages (Iba-1, Ab5076), lymphocytes (CD3, ab11089), endothelial cells (Von Willebrand factor, ab194405), epithelial cells (EpCam, ab7504), myeloperoxidase (MPO, ab25989), CD8 (CD8, ab22378), CD20 (B cells, ab9475), and smooth muscle actin (SMA, ab21027) were obtained from Abcam, MA. Vimentin (sc-52721) from Santa Cruz (Santa Cruz, CA) and the antibody for SARS protein M (APO90991su-n) were obtained from Origene (Rockville, MD). All experiments were performed under the University of Texas Medical Branch (UTMB) and the NIH regulations.
+ Open protocol
+ Expand
2

Quantifying Inflammatory Cells in Adipose Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The presence of inflammatory infiltrate was evaluated with immunohistochemical stains performed on frozen adipose tissue sections (5 μm). Endogenous peroxidase activity was blocked by 3% hydrogen peroxide. The sections were incubated at room temperature for 1 h, respectively, with mouse anti‐macrophage anti‐CD68 (1:300, mouse monoclonal antibody, clone KP1, ab955, Abcam, Cambridge, UK), mouse anti‐B‐lymphocyte anti‐CD20 (1:100, mouse monoclonal antibody, clone L26, ab9475, Abcam), and rabbit anti‐T‐lymphocyte anti‐CD3 monoclonal antibody (1:100, rabbit monoclonal antibody, clone SP7, ab16669, Abcam), reacting with human samples. Universal Quick Kit, Peroxidase, R.T.U. Staining System (Vector Laboratories, Burlingame, CA, USA) was used to label the primary antibody. The reaction product was visualized with 3,3′‐diaminobenzidine (Vector Laboratories) and counterstaining with Mayer's haematoxylin. Negative control was obtained by omitting the primary antibody. All immunostained slides of adipose tissue sections were captured with Aperio scanner (Leica Biosystems). For each immunostaining, two independent pathologists blinded to the treatment counted the positive cells in 20 randomly selected non‐overlapping fields per section at ×200 magnification and evaluated the mean number of positive cells per field.
+ Open protocol
+ Expand
3

Quantitative Immunohistochemistry of Tonsils

Check if the same lab product or an alternative is used in the 5 most similar protocols
Four-micrometer-thick human tonsil sections from patients with recurrent acute tonsillitis (tonsils were not inflamed at the time of surgery) were deparaffinized and rehydrated. An Opal 7-Color Fluorescent IHC Kit (Perkin-Elmer/Akoya, Marlborough, MA, USA) was used according to the manufacturer’s instructions. Slides were stained with primary Abs targeting CD20 (Abcam, Cambridge, UK, ab9475), CD138 (Abcam, Cambridge, UK, ab130405), PanCK (Abcam, Cambridge, UK, ab7753), and IL-38 (eBiosciences, Waltham, MA, USA, 14-7385-82). A PhenoImager HT automated quantitative pathology imaging system (Akoya, Marlborough, MA, USA) was used for image acquisition, and images were analyzed using in-Form 2.5 Software (Akoya, Marlborough, MA, USA). The collection of tonsils was approved by the Ethics Committee of University Medical Center Göttingen (25/7/18).
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of OSCC Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
Four-micrometre sections of FFPE tissue from patients with OSCC were subjected to immunohistochemical staining. Before staining, all specimens were incubated at 60 °C for 2 h. Then, the samples were deparaffinized in xylene, rehydrated in graded alcohol baths, and incubated in 3% H2O2 for 20 min. Heat-induced antigen retrieval was performed in 0.01 M sodium citrate buffer at pH 6.0. Prior to antibody incubation, the slides were placed in a microwave and heated for 10 min at low temperature for antigen retrieval. Specimens were then incubated in 3% BSA for 30 min with the following primary antibodies: rabbit anti-CD20 (1:50, ab9475, Abcam, Cambridge, UK), rabbit anti-CD3 (MAB-0740, MXB Biotec, Fuzhou, China) and rat anti-PNAd (1:100, 120802, BioLegend, San Diego, CA, USA) overnight at 4 °C. Then, the cells were incubated with the secondary antibody at 37 °C for 30 min, stained with DAB for 3–8 min according to the primary antibody, and counterstained with haematoxylin.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Gastric Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin sections from the 200 cases of GC patients were dewaxed in xylene and ethanol. After cleaned in distilled water, the paraffin sections were pretreated with citrate buffer, pH 6.0 (CD177) and EDTA Antigen Retrieval Solution, pH 8.0 (CD4, CD8, CD20, CD56, CD68, and CD117) for 3 min at 120°C in a pressure cooker, and endogenous peroxidase was inhibited with 3% H2O2 in PBS for 10 min. Nonspecific actions in the sections were also blocked with goat serum (BOSTER, USA) for 1 h at room temperature. The sections were then incubated with the primary antibody overnight at 4°C, followed by incubation with the secondary antibody for 30 min at 37°C. Primary antibodies used were CD4 (ab183685, 1 : 1000, Abcam, Cambridge, MA, USA), CD8 (ab4055, 1 : 100, Abcam, Cambridge, MA, USA), CD20 (ab9475, 1 : 50, Abcam, Cambridge, MA, USA), CD56 (ab75813, 1 : 100, Abcam, Cambridge, MA, USA), CD68 (ab213363, 1 : 4000, Abcam, Cambridge, MA, USA), CD117 (ab32363, 1 : 400, Abcam, Cambridge, MA, USA), and CD177 (ab220279, 1 : 200, Abcam, Cambridge, MA, USA). Second antibodies used were goat anti-rabbit IgG (CD4, CD8, CD56, CD68, CD117, and CD177) and goat anti-mouse IgG (CD20). The chromogenic reaction was performed via diaminobenzidine (DAB) staining, and the staining intensity was measured using Image-Pro Plus version 6.2 software (Media Cybernetics, Rockville, Maryland, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!