The largest database of trusted experimental protocols

6 protocols using p smad3

1

Protein Expression Analysis by Western Blot

Check if the same lab product or an alternative is used in the 5 most similar protocols
The concentration of the extracted protein was measured using a BCA protein assay kit (Beyotime, China) according to the manufacturer's protocol. After SDS-polyacrylamide gel electrophoresis, the separated protein was transferred onto polyvinylidene difluoride membranes (Millipore, USA) at 80 V for 1.5 h. The protein was then subjected to immune blot analysis with specific antibodies for ITGBL1 (Abclonal, China), Smad2 (Abclonal), p-Smad2 (Abclonal), Smad3 (Abclonal), p-Smad3 (Abclonal), Smad7 (Abclonal), JDP2 (Affinity, China), TGF-β1 (Abclonal), Ki67 (Abclonal), MMP2 (Proteintech, China), and β-actin (Santa Cruz, USA). All antibodies were diluted to 1:1000, except JDP2, which was diluted to 1:2000. In addition, the secondary antibody reagent in this study was IgG-HRP (Beyotime, China) with 1:5000 dilutions.
+ Open protocol
+ Expand
2

Quantifying Protein Expression in Cellular Extracts

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cells and the protein concentration was determined using a BCA protein assay kit (Servicebio, #G2026). Equal amount of protein from each sample were separated by SDS-PAGE and transferred to polyvinylidene fluoride membranes, then incubated with primary antibodies directed against target proteins: THBS1 (#18304-1-AP; dilution 1:1,000; Proteintech); TGF-β1 (#21898-1-AP; dilution 1:1,000; Proteintech); Smad3 (#A11388; dilution 1:500; ABclonal); p-Smad3 (#AP0554; dilution 1:1,000; ABclonal); MMP3 (#GB11131; dilution 1:1,000; Servivebio); MMP9 (#GB12132-1; dilution 1:500; Servicebio); N-cadherin (#D119282-0100; dilution 1:1,000; BBI); ACTIN (#GB12001; dilution 1:1,000; Servicebio), and GAPDH (#KGAA002; dilution 1:1,000) chosen as a loading control.
+ Open protocol
+ Expand
3

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein of tissues and cells were extracted via RIPA lysis (Beyotime). The concentration of protein was measured using BCA kits (Beyotime). Following, the protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and were transferred onto polyvinylidene fluoride (PVDF) membranes. After blocking, the membranes were incubated with the primary antibodies (ADAM8, 1:1,000, Proteintech; α-SMA, 1:1,000, Affinity; FSP1, 1:1,000, Affinity; VE-cadherin, 1:1,000, ABclonal, Wuhan, China; TGF-β1, 1:1,000, ABclonal; Smad2, 1:1,000, Affinity; p-Smad2, 1:1,000, Affinity; Smad3, 1:1,000, ABclonal; p-Smad3, 1:1,000, ABclonal) at 4°C overnight. The membrane was washed using PBS following incubation with corresponding secondary antibodies. The image was analyzed by Gel-Pro Analyzer (Media Cybernetics, Bethesda, MD, USA).
+ Open protocol
+ Expand
4

Evaluating Kidney Tissue Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Kidney tissues were lysed with RIPA buffer to obtain total protein. After the protein concentration was determined by the BCA protein detection kit (Abcam, UK), the total protein was performed with sodium dodecyl sulfate (SDS) polyacrylamide gel electrophoresis and electrotransfer. Then, the membrane is sealed with 5% completely skimmed milk powder, add the diluted primary antibody solution (NF-κB p65, 6535-1-Ig, Proteintech), (NLRP3, DF7438, Affinity), (caspase-1, AF5418, Affinity), (α-SMA, AF1032, Affinity), (smad3, AF6362, Affinity), (p-smad3, AP0727, Abclonal) and incubate the membrane at 4 °C for 12 h. Next, the membrane was washed with PBST (every 15 min) four times, then incubated with the diluted secondary antibody at room temperature for 2 h to enhance the chemiluminescence detection system immune signal. β-actin as a reference and Image J software was used for optical density analysis.
+ Open protocol
+ Expand
5

Protein Expression Analysis in Transfected Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates were first collected and extracted in RIPA buffer (Millipore, Burlington, MA, USA) 24, 48, and 72 h post-transfection with either siPDIA-4 or scrambled controls. Equal amounts of protein were loaded onto SDS-polyacrylamide gels and transferred to the PVDF membranes (Thermo Fisher, Madison, WI, USA). Membranes were blocked for 1 h in 1X TBS with 3% BSA and incubated overnight at 4 °C with primary antibodies. The primary antibodies used in this study include p21 (Cell Signaling #2947S), Cleaved Caspase-3 (Cell Signaling #9664S), LC3 I/II (Cell Signaling #4600IAP), GAPDH (Cell Signaling #5174S), p-SMAD3 (ABclonal #51451), SMAD3 (ABclonal #28379), Βeta Actin (Cell Signaling #4970S), Βeta Tubulin (Proteintech Cat#66240-1-Ig), Bax (Cell Signaling #2772S), Bcl-2 (Cell Signaling #3498S), CD31 (ABclonal Cat#A4900), α smooth muscle actin (ABclonal Cat#A17910), N-Cadherin (ABclonal Cat#A19083), PDIA-4 (Cell Signaling #5033S), and P53 (Santa Cruz #sc-126). Proteins were then incubated with goat anti-rabbit secondary antibody (Enzo ADI-SAB-300-J) for 2 h at room temperature. Bands were visualized with the ECL substrates using a chemiluminescence channel and 700 channels in the LiCor Fc Odyssey system. The bands were quantified using LiCor Fc Odyssey inbuilt software version 5.2.
+ Open protocol
+ Expand
6

Molecular Mechanisms of Fibrosis Regulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
SKI was purchased from Xi’an Century Shenkang Pharmaceutical Industry Co., Ltd. (Xi’an, China, 202102103). TGF-β1 (Santa Cruz, sc-130348), E-Cad (CST, #3195), P-Smad3 (Abclonal, A19115), P-Smad2/3 (Abclonal, A19115), Smurf2 (Santa Cruz, sc-518164), α-SMA (CST, #19245), collagen I (Abclonal, A5786), Smad7 (Santa Cruz, sc-365846), Smad2/3 (Santa Cruz, sc-133098), ubiquitin (Santa Cruz, sc-8017), TβR-I (Santa Cruz, sc-101574), TβR-II (Santa Cruz, sc-1700), Smad3 (Santa Cruz, sc-101154), serum creatinine (Scr), and blood urea nitrogen (BUN) assay kits were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Real-Time PCR Easy™- SYBR Green I (FOREGENE, QP-01014).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!