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8 protocols using cd3 bv785

1

Immunophenotyping of Lymphocytes

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Cell staining, flow cytometry and intracellular staining was performed as previously described. [26 (link)] Isolated spleen and liver infiltrating lymphocytes were stained with Live Dead Near-IR Dead Cell kit (Invitrogen), CD3-BV785 (Biolegend), CD45-BV510 (Biolegend), CD8-PE-Cy7 (Biolegend), CD4-PE-CF594 (Becton Dickinson), and CD25-PE-Cy7 (Becton Dickinson). Intracellular staining was performed using anti-mouse forkhead box P3 (FoxP3)-AF488 (MF23; BD Pharmingen). Intracellular cell staining for IFNγ and flow cytometry was performed as previously described using IFNγ-BV421 (Biolegend) [26 (link)].
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2

Immunophenotyping of Whole Blood and PBMCs

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For immunofluorescence staining of whole blood and PBMC, antibodies included CD45-ECD (Beckman Coulter, Indianapolis IN), CD3-e780, CD4-e450, CD8-AF700, CD15-FITC (eBioscience, San Diego, CA), CD45-FITC, CD4-PerCP-Cy5-5, CD14-PECy7, HLA-DR-APC, HLA-DR-BV421, CD8-APC-H7, CCR7-BV605, CD25-BV605, CD45RA-PECy7, CD45RO-APC-H7, CCR4-PECy7, CD38-APC, CD127-BV650 (BD Bioscience, San Jose, CA), CD14-AF700, and CD3-AF700 (Biolegend, San Diego, CA). For phosphoSTAT staining, antibodies included CD3-BV785 (Biolegend), CD4-BV605, CD8-BV510, CD14-PECy7, CD19-BV421, CD16-BV650, pSTAT3-647, pSTAT5-PE (BD Biosciences), and pSTAT1-488 (Cell Signaling Technologies, Danvers, MA). Cell types were identified according to the criteria of the Human Immunology Project [19 (link)], and a full list of antibodies used to identify individual cell types including those not reported here can be found in Additional file 2: Table S1. Hematological toxicity was graded according to NCI CTCAE v4.0 guidelines and is reported in Additional files 3 and 4: Tables S2 and S3.
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3

Multiparametric Spleen Cell Analysis

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Mouse spleens were first disrupted in R10 (RPMI with 10% FBS) containing 1mg/ml collagenase D (Roche collagenase D). After 30 min, the suspension was passed through a 70 μm cell strainer and then lysed with the ACK lysis buffer system to remove erythrocytes (Lonza). The splenocytes were then washed in PBS and then stained with viability dye (Aqua or Blue Viability at 0.025 mg/ml; Thermofisher) before our staining panels were applied. Staining panels were derived from the following fluorescently conjugated anti-murine antibodies, each used at a final dilution of 1:100 in PBS: CD11c-PE Cy7 (N418, Biolegend); B220-BV605 (RA3–6B2, BD Horizon); B220-FITC (RA3–6B2, BD PharMingen); MHCII-BV510 (M5/114.15.2, Biolegend); CD3-BV785 (17A2, Biolegend); CD19-PerCP/Cy5.5 (6D5, Biolegend); IL6R-APC (D7715A7, Biolegend); CD11b-APC (M1/70, Biolegend); B220-FITC (RA3–6B2, BD PharMingen); CD138-BV421 (281–2, BD Horizon); gp130-APC (KGP130, eBioscience); CD11b-FITC (M1/70, Biolegend); Siglec-H-APC (551, Biolegend); CD93 (AA4.1, Biolegend); CD8α-BV605 (53–6.7, Biolegend); DCIR2-PE (33D1, Biolegend); Ly6C-BV650 (HK1.4, Biolegend); F4/80-Alexa 488 (BM8, Thermofisher). Samples were assayed on a 5 laser LSR Fortessa (BD Biosciences) and data was analyzed using FlowJo software version 9.3.2 (TreeStar).
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4

Immunophenotyping of Antigen-Specific B Cells and T Follicular Helper Cells

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For detection of antigen-specific GC B cells, freshly isolated LN cell suspensions from individual mice were stained with Aqua Viability Dye (Thermo) and Fc blocked with an anti-CD16/32 antibody (clone 93; BioLegend). Cells were then surface stained with the relevant probes (APC or PE labelled stem, HEL, OVA or gp120 proteins for baiting antigen-specific GC B cells) [10 (link)] and the following antibodies: CD45 APC-Cy7 (30-F11; BD), CD3 BV785 (145-2C11; BioLegend), F4/80 BV785 (BM8; BioLegend), Streptavidin BV785 (BD), B220 BUV737 (RA3-6B2; BD), IgD BUV395 (11-26c.2a; BD), CD38 PE-Cy7 (90; BioLegend), GL7 AF488 (GL7; BioLegend). For detection of Tfh cells ex vivo, freshly isolated LN cell suspensions from individual mice were stained with the following panel: Live/dead Red (Thermo), B220 BV605 (RA3-6B2; BD Biosciences), CD3 BV510 (145-2C11; BioLegend), CD4 BUV737 (RM4-5; BD Biosciences), CXCR5 BV421 (L138D7; BioLegend), PD-1 BV786 (29F.1A12; BioLegend). For Ag-specific Tfh identification [23 (link)], cells were cultured as described above and then stained with the following panel: Live/dead Red (Thermo), B220 BV605 (RA3-6B2; BD), CD3 BV510 (145-2C11; BioLegend), CD4 BUV737 (RM4-5; BD), CD25 BB515 (PC61; BD), OX40 PeCy7 (OX-86; BioLegend). All samples were acquired on a BD LSR Fortessa using BD FACS Diva and data was analyzed in FlowJo v10.
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5

Evaluating NK Cell Cytotoxicity

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Pre-cultured PBMCs (5 × 105) with or without C-Vx for 72 h, were stained with anti-human-CD107a-APC mAb (Biolegend, San Jose, CA, USA) and cultured alone or together with K562 cells (5 × 104) at a 10:1 effector/target (E:T) ratio for 5 h at 37°C incubator. After the culture, PBMCs were labelled with anti-human-CD56-BV711, -CD16-BV570, -CD3-BV785, and -CD8-FITC (Biolegend, San Jose, CA, USA) mAbs. In order to determine the levels of intracellular cytotoxic granules; perforin and granzyme B, samples were fixed and permeabilized according to the manufacturer’s directions (Cytofix&Cytoperm Kit, BD Biosciences, San Jose, CA, USA), and stained with anti-human-Perforin-PerCp/Cy5.5 and -Granzyme B-Alexa Fluor 700 (Biolegend, San Jose, CA, USA) mAbs. Stained cells were measured and analyzed by flow cytometry.
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6

Activation and Cytokine Release of TCR-Engineered T Cells

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Primary T cells were obtained by isolation of PBMCs from buffy coats of HLA-A2 negative donors by ficoll density gradient lymphoprep, followed by pan-T cell isolation according to manufacturer’s protocol (139-096-535, Miltenyi Biotec, Leiden, The Netherlands). T cells were lentivirally transduced with EV or TCR-E7 as described in (27 (link)). THP-1.EV, THP-1.SIRP-ß2 and THP-1.SIRP-ß2.K202L were inactivated for 1 h (37°C) by incubation with 6 µg/mL Mitomycin-C, followed by washing thrice in PBS. 100 µL of inactivated cells were plated at 1x104 cells per well, followed by a 2 h incubation (37°C, 5% CO2) with or without 10 µg/mL of E7 HPV peptide (E711-20, Peptides & Elephants, Berlin, Germany). Then, 100 µL of T cells (expressing EV or TCR-E7) were added to the THP-1 cells at a 5:1 E:T ratio (based on GFP positive T cells) and incubated for 48 h (37°C, 5% CO2). Samples were collected, spun down (300 xG, 5 min) and stained for CD3-BV785 (317330, BioLegend, San Diego, USA), CD8-BV421 (344748, BioLegend, San Diego, USA), CD69-PerCP (310928, BioLegend, San Diego, USA) and CD25-APC (21810256, ImmunoTools, Friesoythe, Germany) and analyzed using flow cytometry. The supernatant was analyzed for IFN-y, using an IFN-y cartridge (SPCKB-PS-002574, Biotechne, Minneapolis, USA) with the Ella automated immunoassay system, following manufacturer’s protocol.
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7

Multiparametric Flow Cytometry Analysis

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The following antibodies were purchased from BD: Ki67 AF700, CD4 Pacific Blue, CD8α PE-CF594, CD3 PE-CF594, CD4 BV650, and CD11a BUV805. The following antibodies were purchased from eBioscience: KLRG-1 FITC, Ly6C (clone HK1.4) PerCP-Cy5.5, CD69 eFluor450, CD69 FITC, CD69 PE-Cy7, T-bet eFluor660, CD45.2 APC-eFluor780, and CD3 APC-eFluor780. The following antibodies were purchased from BioLegend: LFA-1 PerCP-Cy5.5, CD3 Pacific Blue, CD3 BV785, CD11a PE, and CD11a PErCP-Cy5.5. Invitrogen live/dead Aqua stain or Tonbo Ghostdye510 was used to determine viability. PE-conjugated Tgd-057 MHC-I tetramers and PE-conjugated AS-15 MHC-II tetramers were provided by NIH Tetramer Core. All samples were run on an LSRFortessa (BD), Canto (BD), or FACSymphony A3 and analyzed using FlowJo software (Tree Star). Images were obtained using the ImageStream (Amnis) and analyzed using IDEAS software (Amnis). To determine T-bet localization, nuclear and cytoplasmic masking functions were made using DAPI staining; these masks were then applied to T-bet expression.
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8

Isolation and Analysis of Murine Lymphocytes

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Spleens were mechanically disrupted using the cap of an Eppendorf tube to grind tissue against a piece of 100 μm nylon mesh that was placed in a petri dish. The disrupted spleen tissue was then incubated in red blood cell lysing buffer (Biolegend, San Diego, CA, United States) for 2 min and then resuspended in RPMI media. Mesenteric lymph nodes were mechanically disrupted in RPMI media alone. Cell pellets from blood samples were resuspended in red blood cell lysing buffer (Biolegend, San Diego, CA, United States), incubated for 2 min, centrifuged, then incubated in lysis buffer a second time. Cell suspensions from all tissues were filtered through 100 μm nylon mesh and aliquots containing 1 × 106 – 5 × 106 cells stained with the fluorescently conjugated antibodies: CD4 (Pacific. Blue), CD8 (PE), and CD3 (BV785) (Biolegend, San Diego, CA, United States). Samples were analyzed using a Beckman Cytoflex flow cytometer and analyzed using Flowjo flow cytometry analysis software (FlowJo LLC, OR).
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