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6 protocols using nbp2 24891

1

Multiplexed EV Membrane Protein Staining

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The following procedure was used to stain the CD9, CD63, and PD-L1 membrane protein and ALB and APOB protein in EVs. EVs were captured and immobilized onto the nano-biochip, as discussed earlier. The membrane proteins may be detected independently or together with RNA detection. In the latter case, RNA detection was carried out first. Samples were then washed thoroughly, after which CD9-AF488 (NB500-327AF488, Novus Biologicals), CD63-AF488 (NBP2-42225AF488, Novus Biologicals), or isotype control (IC002G; R&D Systems, Minneapolis, MN, USA), PD-L1–AF647 (ab209960, Abcam), primary PD-L1 (NBP1-76769, Novus Biologicals), or isotype control (NBP2-24891, Novus Biologicals), and secondary Alexa Fluor 568 (A-11011, Thermo Fisher Scientific), ALB-AF488 (IC1455G, Novus Biologicals), and APOB-FITC (ab27637, Abcam) antibodies were applied followed by incubation. Incubation took place at 37°C for both primary and secondary antibodies, and the incubation time was 60 min for the former and 30 min for the latter.
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2

Histological Analysis of Murine Tissues

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Murine small intestinal paraffin sections were prepared and stained with hematoxylin and eosin (H & E) as described previously38 (link). Liver samples were fixed in 10 % neutral-buffered formalin, dehydrated through a graded alcohol series and xylene, and then embedded in paraffin blocks. Liver tissues embedded in paraffin were sectioned at 5 μm and stained with H & E, rat anti-mouse CD3 (clone 17A2, cat#100201, BioLegend, 0.1 μg/ml), rat anti-mouse/human CD45R/B220 (clone RA3-6B2, cat# 103202, BioLegend, 0.5 μg/ml), and purified rat anti-mouse/human Mac2 (clone M3/38, cat# CL8942AP, Cedarlane, Canada, 0.1 μg/ml). Aortic root sections were stained with Mac 2 antibody (clone M3/38, Cedarlane; 0.1 μg/ml), rat anti mouse α-Smooth Muscle Actin antibody (clone1A4, 0.2 μg/ml; Santa Cruz, sc-32251) and rabbit anti-mouse Caspase 3 antibody (active/cleaved; NB 100-56113, Novus Biologicals). Rat IgG2a control (CLCR2A00, Cedarlane), rat IgG2b (RTK4530, #400666, BioLegend) and rabbit polyclonal IgG (NBP2-24891, Novus Biologicals) were used as isotype controls. All staining were performed at the University of Virginia Cardiovascular Research Center Histology Core.
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Bovine Endometrium and Fetal Trophoblast Immunohistochemistry

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Immunohistochemistry for CCR1, CCR2, CCR3, and CXCR3 in the bovine endometrium and fetal trophoblast on day 18 of pregnancy was performed using the automated Ventana HX System Discovery with a DabMapKit (Roche Diagnostics), as described previously [47 (link)]. The 5 µm-thick sections from paraffin-embedded tissue were incubated at room temperature with rabbit polyclonal anti-human CCR1 antibody (ab140756, Abcam PLC, Cambridge, UK; dilution 1:200), rabbit polyclonal anti-human CCR2 antibody (NBP1-48337, Novus Biologicals LLC, Littleton, CO, USA; dilution 1:100), rabbit polyclonal anti-human CCR3 antibody (251536, Abbiotec LLC, San Diego, CA, USA; dilution 1:50), or rabbit polyclonal anti-mouse CXCR3 antibody (orb5924, Biorbyt Ltd., Cambridge, UK; dilution 1:50) for 12 h. The signals were detected using anti-rabbit IgG-Biotin conjugate (Sigma-Aldrich Co., LLC, St. Louis, MO, USA) diluted 1:100 for 1 h, and then counterstained with hematoxylin. Negative controls were performed using normal rabbit IgG (NBP2-24891, Novus Biologicals) diluted at concentrations equivalent to the primary antibodies. The sections were observed with a Leica DMRE HC microscope (Leica Microsystems K.K., Tokyo, Japan) and photographed with a Nikon Digital Sight DS-Fi1-L2 (Nikon Instruments Co., Tokyo, Japan).
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4

Bovine Corpus Luteum Immunohistochemistry

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Immunohistochemistry for PPARD, CYP21A2, IFNαR1, and IFNαR2 in the bovine CLs on day 18 of pregnancy and on day 15 of non-pregnancy was performed using the automated Ventana HX System
Discovery with a DabMapKit (Roche Diagnostics) as per a previously described method [15 (link)]. The 5 µm-thick sections from the paraffin-embedded luteal
tissue were incubated at room temperature (20˚C) with rabbit polyclonal anti-human PPARD antibody (#ARP38765_T100, Aviva Systems Biology, San Diego, CA, USA; 1:50), rabbit polyclonal
anti-human CYP21A2 antibody (#ARP60144_P050, Aviva Systems Biology; 1:25), rabbit polyclonal anti-human IFNαR1 antibody (#bs-4116R, Bioss, Woburn, MA, USA; 1:50) or rabbit polyclonal
anti-human IFNαR2 antibody (#bs-7022R, Bioss; 1:50) for 12 h. The signals were detected using anti-rabbit IgG-Biotin conjugate (Sigma-Aldrich, LLC, St Louis, MO, USA; 1:100) for 1 h, and
then counterstained with hematoxylin. Negative controls were assessed using normal rabbit IgG (#NBP2-24891, Novus Biologicals LLC, Littleton, CO, USA) diluted at concentrations equivalent to
the primary antibodies. The sections were observed with a Leica DMRE HC microscope (Leica Microsystems, Tokyo, Japan) and photographed with a Nikon Digital Sight DS-Fi1-L2 (Nikon
Instruments, Tokyo, Japan).
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Immunohistochemical Profiling of Chemokine Receptors in Bovine Placenta

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Immunohistochemistry for CCL8, CCR1, CCR2, and CCR5 in the bovine placentome at parturition was performed using the automated Ventana HX System Discovery with a DabMapKit (Roche
Diagnostics, Basel, Switzerland), as described previously [16 (link)]. The 5 µm-thick sections from formalin-fixed and paraffin-embedded tissue were incubated
at room temperature with rabbit polyclonal anti-bovine CCL8 antibody (MBS2026335; 1:400; MyBioSource, San Diego, CA), rabbit polyclonal anti-human CCR1 antibody (ab140756; 1:200; Abcam PLC,
Cambridge, UK), rabbit polyclonal anti-human CCR2 antibody (NBP1-48337; 1:100; Novus Biologicals LLC, Littleton, CO), or rabbit polyclonal anti-human CCR5 antibody (NBP2-31374SS; 1:100;
Novus Biologicals LLC) for 12 h. The signals were detected using anti-rabbit IgG-biotin conjugate (Sigma-Aldrich, St. Louis, MO, USA) diluted 1:100 for 1 h and then counterstained with
hematoxylin. Negative controls were performed using normal rabbit IgG (NBP2-24891; Novus Biologicals LLC) diluted at concentrations equivalent to the primary antibodies.
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6

Bovine Corpus Luteum CCR3 and XCR1 IHC

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Immunohistochemistry for CCR3 and XCR1 in the bovine CL on days 150–160 of pregnancy was performed using the automated Ventana HX System Discovery with a DabMapKit (Roche Diagnostics GmbH, Mannheim, Germany) as described previously in detail by our laboratory [21 (link)]. The CL samples for immunohistochemistry were fixed with 10% neutral formalin for 24 h. The 5 µm-thick sections from paraffin embedded luteal tissue were incubated at room temperature with a rabbit polyclonal anti-human CCR3 antibody (251536, Abbiotec LLC, San Diego, CA, USA) or rabbit polyclonal anti-human XCR1 antibody (LS-A159, LifeSpan BioSciences, Seattle, WA, USA) diluted 1:100 each in Discovery Ab diluents (Roche) for 2 h. Nucleotide and amino acid sequence homologies of human CCR3 with bovine CCR3 are 80% and 74%, and those of human XCR1 with bovine XCR1 are 85 and 78%, respectively. The signals were detected using anti-rabbit IgG-Biotin conjugate (Sigma-Aldrich,
St Louis, MO, USA) diluted 1:100 for 1 h and then counterstained with hematoxylin. Negative controls were performed using normal rabbit IgG (NBP2-24891, Novus Biologicals, LLC, Littleton, CO, USA) diluted at concentrations equivalent to the primary antibodies. The sections were observed with a Leica DMRE HC microscope (Leica Microsystems, Tokyo, Japan) and a Nikon Digital Sight DS-Fi1-L2 (Nikon Instech, Tokyo, Japan).
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