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3 protocols using cd4 apc rpa t4

1

Comprehensive Immune Cell Profiling

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Single-cell suspensions were first stained with primary antibodies against human CD53 (mem53, Serotec), CD37 (WR17, home-made) or isotype controls in PBS with 1 % BSA and 0.05 % NaN3 (PBA) supplemented with 2 % HS for 30 min at 4 °C, followed by incubation with goat-anti-mouse Alexa488 antibody (Molecular Probes). Next, cells were stained with the following anti-human antibodies: CD3-PE (HIT3a, Becton–Dickinson), CD4-APC (RPA-T4, Biolegend), CD8-PerCP (SK1, Becton–Dickinson), CD20-APC (2H7, eBioscience), CD14-PE (CLB-mon/1, Pelicluster, Sanquin), CD56-APC (NCAM16.2, Becton–Dickinson), CD19-PerCP (4G7, Becton–Dickinson), BDCA1-FITC (AD5-8E7, Miltenyi) and/or BDCA2-FITC (AC144, Miltenyi). Stained cells were analyzed using FACS Calibur (Becton–Dickinson) and FlowJo software (version 9.7, TreeStar Inc.).
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2

Flow Cytometric Analysis of BLaER1 Transdifferentiation

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For flow cytometric analysis of BLaER1 transdifferentiation and surface marker expression, 1 × 106 native or transdifferentiated BLaER1 cells were collected, washed once in FACS buffer (10% FCS, 0.1% Sodium acetate in PBS; 10 min, 300g, 4°C) and stained with CD11b-APC (M1/70, Biolegend), CD19-PE (HIB19, Biolegend), CD14-PacBlue (M5E2, Biolegend), CD163-PE (GHI/61, BD), CD206-APC (19.2, BD), CD11c-VioBlue (MJ4–27G12, Miltenyi), CD4-APC (RPA-T4, Biolegend), CXCR4-PE (12G5, BD), CCR5-PE (T21/8, Biolegend) or respective isotype controls (Biolegend, BD, Miltenyi) and Fixable Viability Dye eFluor 780 (Thermo Fischer) in presence of FC Block (BD, 20 min, 4°C). Stained cells were washed in FACS buffer twice and fixed in 2% paraformaldehyde (30 min, RT), before analyzing on a LSR II instrument (BD). For readout of HIV-1-mCherry infection, up to six wells of a 96-well plate were pooled and stained with CD11b-APC and Fixable Viability Dye eFluor 780 as detailed above. For intracellular SAMHD1 staining, cells were fixed in Cytofix Buffer (BD; 37°C, 10 min), subsequent to cell surface staining, and permeabilisation with Perm Buffer III (BD; 2min on ice), before staining with anti-SAMHD1 (12586–1-AP, Proteintech) or an isotype control (CST; 60 min, RT) and anti-rabbit IgG-DyLight 405 (Thermo Fischer; 60 min RT). Infected cells were analyzed on a BD LSRFortessa.
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3

Immune Cell Isolation and Sorting

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PBMC and SFMCs were isolated from venous blood by density centrifugation (Histopaque; Sigma). PBMCs and SFMCs were stained with the following antibodies: live/dead eFluor780; CD14 PE-Cy7 (M5E2); CD3 FITC (SK7); CD4 APC (RPA-T4); CD8a PE (RPA-T8);
CD45RA BV421 (HI100) (all BioLegend). Live CD3-CD14+, CD3+CD8+CD45RA-and CD3+CD4+CD45RA-cell populations were bulk sorted then frozen into RLT buffer (Qiagen).
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