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4 protocols using tank blot device

1

Western Blot Analysis of Parasite Proteins

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Parasite protein samples of schizont stages (40–44 hpi) were prepared by saponin-lysis of infected erythrocytes and separated on a 12% SDS-PAGE gel at 120 V for 2 h. Separated proteins were transferred to a nitrocellulose membrane (LI-COR) for 1 h at 90 V and 4 °C using a tank blot device (Bio-Rad) according to the manufacturer’s instructions. Membranes were blocked with 5% milk in TBS followed by incubation with primary antibody diluted in 2.5% milk in TBS-T at 4 °C overnight. Primary antibodies were diluted as follows: mouse-anti-GFP (Roche) 1:2000; rabbit-anti-GFP (Thermo Scientific) 1:1000; mouse-anti-RFP (6G6, ChromoTek) 1:2000; and rabbit-anti-BiP (68 (link)) 1:2000 in 2.5% milk in TBS-T. After incubation with primary antibodies, membranes were 3× washed with TBS-T and incubated with secondary antibody for 1 h at room temperature in the dark. Secondary antibodies were diluted as follows: goat-anti-mouse800CW (LI-COR) 1:20,000; goat-anti-rabbit800CW (LI-COR) 1:20,000; goat-anti-mouse680RD (LI-COR) 1:20,000; and goat-anti-rabbit680RD (LI-COR) 1:20,000 in 2.5% milk in TBS-T. Membranes were washed again three times with TBS-T and analyzed in an Odyssey FC Imager (LI-COR).
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2

Western Blot Analysis of P. berghei Proteins

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For P. berghei parasite protein extracts, blood of infected mice was washed twice in 1 × PBS and infected red blood cells purified on a Percoll gradient59 (link) as described for P. falciparum60 . The purified infected RBCs were washed thrice with 1 × PBS, the pellet lysed in Laemmli sample buffer and the proteins separated on 10% SDS PAGE gels followed by transfer to nitrocellulose membranes (Schleicher & Schüll) in a tank blot device (BioRad). The blots were blocked in 5% milk in 1 × PBS and reacted with the following rabbit-derived antibodies: anti-PbSBP1-mid (1:200'000), anti-PbSBP1-C (1:1'000), anti-PbMAHRP1a (1/500), anti-PfSBP1 (1/1,000) and anti-PfMAHRP1 (a kind gift of Hans-Peter Beck) (1/2,500) for 2–4 h hours. After 5 washes in 1 × PBS, goat anti-rabbit horseradish peroxidase-conjugated secondary antibody, diluted 1/2,500 (Dianova), was applied for 1 h, the membrane washed, reacted with ECL (GE Healthcare) and the signal detected using X-ray films. Alternatively, secondary antibodies were anti-rabbit IgG 800CW IRDye or IgG 680LT IRDye (both 1:10'000) and an Odyssey Imaging system (Li-Cor Bioschiences) was used for detection.
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3

Western Blot Analysis of Parasite Proteins

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Protein samples were resolved by SDS-PAGE and transferred to nitrocellulose membranes (Protran) in a tankblot device (Bio-Rad) using transfer buffer (0.192 M Glycine, 0.1% SDS, 25 mM Tris) with 20% methanol. Blocking of membranes and dilutions of antibodies were done in PBS containing 5% skim milk. Washing steps were done with PBS. Primary antibodies were applied in the following dilutions: mouse anti-GFP (Roche) 1:1000; rabbit anti-GFP (Thermo) 1:2000; rat anti-mCherry, 1:1000 (Chromotek); rabbit anti-SERA5, 1:2000 (newly raised); rabbit anti-REX3, 1:2000 (newly raised); mouse anti-SBP1N, 1:2500 (newly raised); rabbit anti-aldolase, 1:4000 (newly raised); mouse anti-HSP101, 1:1000 [7 (link)]; rabbit anti-DHFR (Abcam), 1:1000; rat anti-HA (Roche) 1:4000. Horseradish peroxidase-conjugated secondary antibodies used were goat anti-rat (Dianova) and goat anti-mouse (Dianova) and diluted 1:3000 as well as donkey anti-rabbit (Dianova) 1:2500 and applied after three washes. Immunoreactions were detected by enhanced chemiluminiscence (Bio Rad/ Thermo) and detected on CEA RP NEW x-ray films (Agfa). For quantification of Western blot signals, band intensities were measured with a Chemi Doc XRS imaging system (Bio-Rad) and densitometry analyses were done with Image Lab Software 5.2 (Bio-Rad). Data are representative of three independent experiments.
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4

Transfection and Selection of P. falciparum

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Transfections of P. falciparum parasites were done with 100 mg of purified plasmid DNA (QIAGEN) using either a Gene Pulser Xcell (BioRad) or an Amaxa system (Nucleofector II AAD-1001N, program U-033) as previously described (Birnbaum et al., 2017) . Drug concentration for selection of transfected parasites were 4 nM for WR99210 (Jacobus Pharmaceuticals), 2 mg/ml for Blasticidin S (Invitrogen) and 0.9 mM for DSM1 (MRA/BEI Resources). SLI was done as described (Birnbaum et al., 2017) by adding 400 mg/ml G418 (Sigma) to the culture after the parasites carrying the episomal plasmid appeared after tranfection. After parasitemia recovered under G418 selection, correct integration was checked by PCR across the integration junctions and by a PCR verifying absence of the unmodified locus. Correct expression of the tagged VPS45 was also confirmed by Western blot using a tankblot device (BioRad) to transfer SDS-PAGE separated protein onto Amersham Protran membranes (GE Healthcare). Immune reactions were carried out using 1/1000 diluted monoclonal mouse anti-GFP antibodies (Roche) as primary antibody and 1/5000 diluted HRP-conjugated anti-mouse secondary antibodies (Dianova). Detection was done using ECL (Thermo Scientific) and CEA RP New Medical X-Ray Screen Film (Blue Sensitive).
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