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Ga50461 2

Manufactured by Agilent Technologies
Sourced in United States

The GA50461-2 is a high-performance liquid chromatography (HPLC) system component manufactured by Agilent Technologies. It serves as a key part of an HPLC setup, providing precise control and monitoring of the mobile phase flow rate and pressure. The detailed specifications and intended applications of this product are not available in this factual and unbiased response.

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5 protocols using ga50461 2

1

Immunocytochemistry of Murine ACC Neurons

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After 1–2 days in culture, except where noted, wt and GCaMP6f-expressing murine ACC were rinsed with phosphate-buffered saline (PBS) and fixed in 4% paraformaldehyde in PBS for 10 min. Cultures were blocked in PBS containing 0.1% Triton X-100 (PBST) and 10% fetal bovine serum (FBS) and incubated overnight at 4°C with antibodies against TH (rabbit, PA5-85167, ThermoFisher, Waltham, MA, USA), phenylethanolamine N-methyltransferase (PNMT) (rabbit, AB110, MilliporeSigma, Burlington, MA, USA), or S100β (rabbit, GA50461-2, Agilent, Santa Clara, CA, USA). For GCaMP6f-expressing cells, the overnight incubation included a green fluorescent protein (GFP) antibody (goat, 600-101-215, Rockland Immunochemicals, Pottstown, PA, USA). Primary antibodies were diluted 1:1000. Cells were then rinsed several times with PBS and incubated for one hour at room temperature in the dark with AlexaFluor 594-conjugated donkey-anti-rabbit and/or AlexaFluor 488-conjugated donkey anti-goat antibodies (ThermoFisher). Secondary antibodies were diluted 1:500 in 10% FBS in PBST that also contained 1 μg/ml bisbenzimide (Hoechst 33342; ThermoFisher) to label nuclei. Cells were rinsed with PBS and brightfield and fluorescence images were acquired using a Nikon TE 2000 epifluorescence microscope equipped with an iXonEM + DU-897 EMCCD camera (Andor).
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2

Immunofluorescence Staining of Mouse Brain

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Immunofluorescence staining was performed by using paraffinized slices as described previously.47 Sagittal sections of mouse brain were stained with anti‐GFAP (Z033401‐2, Agilent Technologies, CA, USA) and anti‐S100β (GA50461‐2, Agilent Technologies) antibodies for astrocytes and an anti‐IBA1 antibody (Fujifilm, Tokyo, Japan) for microglia. Stained slices were mounted with DAPI‐Fluoromount‐G (SouthernBiotech). Fluorescence was acquired by using the Axiocam 506 mono (Carl Zeiss, Oberkochen, Germany) equipped with an inverted 63× 0.45NA UPLFL objective on an Axio Imager M2 Upright Microscope (Carl Zeiss). Images were taken in the channel sequence of FITC (Ex 493, Em 528), DAPI (Ex 390, Em 435), and Texas Red (Ex 576, Em 603). Six to ten locations in each slide were selected for the quantification. To examine astrocyte morphology/hypertrophy, GFAP signal area for individual astrocytes was measured as cell size, and the average area for each cell process was measured to determine GFAP fiber thickness. To measure astrocyte cell number, S100β+ cells were counted in cortex and hippocampus images.
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3

Spatial Transcriptome Analysis of Tumor-Nerve Interactions

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Eight of the 142 patients were selected for transcriptome spatial analysis using the NanoString GeoMx DSP/ Human NGS Whole Transcriptome Atlas (Fig. 1D). Cases were selected based on location (tongue) and presence of nerves in tissue sections. Each slide with sections from two patients was stained with fluorescence-labeled antibodies to allow identification of tissue: pan-cytokeratin (AE1/AE3, Novus Biologicals, #NBP2–33200AF647) for epithelial cells and S100 (Dako Omnis GA50461–2, dilution 1:2) for nerves. Nerve areas of interest (AOIs) were selected for analysis based on nerve-tumor proximity as follows: 1) NC (nerves close): within 100 µm from tumor with at least 50% surrounded by tumor cells (n=6); 2) N100: within 100 µm from tumor but excluded from NC (n=8); 3) N1000: 100 to 1000 µm from tumor (n=16); 4) NF (nerves far): beyond 1 mm from any tumor cell (n=16). AOIs were drawn manually around nerves. Only nerves with at least 16,000 µm2 and at least 50 cells were selected to ensure proper RNA probe counts.
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4

Spatial Transcriptome Analysis of Tumor-Nerve Proximity

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Eight of the 142 patients were selected for transcriptome spatial analysis using the NanoString GeoMx Digital Spatial Profiler (DSP)/Human NGS Whole Transcriptome Atlas (Fig. 1D). Cases were selected on the basis of location (tongue) and presence of nerves in tissue sections. Each slide with sections from 2 patients was stained with fluorescence-labeled antibodies to allow identification of tissue: pan-cytokeratin (AE1/AE3, Novus Biologicals, #NBP2-33200AF647) for epithelial cells and S100 (Dako Omnis GA50461-2, dilution 1:2) for nerves. Nerve areas of interest (AOI) were selected for analysis based on nerve-tumor proximity as follows: (i) NC (nerves close): within 100 μm from tumor with at least 50% surrounded by tumor cells (n = 6); (ii) N100: within 100 μm from tumor but excluded from NC (n = 8); (iii) N1000: 100 to 1,000 μm from tumor (n = 16); (iv) NF (nerves far): beyond 1 mm from any tumor cell (n = 16). AOIs were drawn manually around nerves. Only nerves with at least 16,000 μm2 and at least 50 cells were selected to ensure proper RNA probe counts.
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5

Immunohistochemical Analysis of ACOX1 in Sciatic Nerve

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Mouse sciatic nerves were fixed in 4% paraformaldehyde and cryo-protected in 20% sucrose. To detect the endogenous expression of ACOX1 in sciatic nerve, the following antibodies were used: Mouse anti-hACOX1 (1:500; HPA021195, Sigma-aldrich, STAR Methods), Rabbit antiS100 (1:1000; GA50461–2, DAKO, STAR Methods), Chick anti-Neurofilament-H (1:5000; 835601, BioLegend, STAR Methods).
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