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7500 fast system sds

Manufactured by Thermo Fisher Scientific

The 7500 Fast System SDS is a real-time PCR instrument designed for fast and accurate nucleic acid quantification. It features a thermal cycling system capable of rapid temperature changes, allowing for fast PCR run times. The system uses SDS (Sequence Detection System) technology to monitor the amplification of DNA or RNA samples in real-time.

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2 protocols using 7500 fast system sds

1

Investigating Conflicting PCR Results with L1, MGP5+/6+ Primers

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In addition, the samples (n=30, except the 7 excluded samples) were finally analyzed using the L1, MGP5+/6+ primer system 11 (link). This was performed to further investigate possible reasons for conflicting results in the reinvestigation process and to examine the negative samples using a general method. Analyses were carried out in sample duplicates of 25 μL together with negative and positive controls for both MGP and the human control gene HBB. Sample reactions contained 1x Quantitect SYBR green master mix (Qiagen, Germany), either 0.3 μM forward and reverse primers for HBB or 0.3 μM forward and reverse MGP primer mix and DNA of ∼50 ng, and were manually applied on 96-well plates. Subsequent analysis was performed on the 7500 fast real-time PCR system (Applied Biosystems, the Netherlands). The standard program was used with a denaturation step at +95°C for 10 min, followed by 5 cycles at +95°C for 0.5 min, +42°C for 0.5 min, and +72°C for 0.75 min; 45 cycles at +95°C for 0.5 min, +64°C for 0.5 min, and +72°C for 0.75 min; and a final step at +72°C for 10 min. The software 7500 fast system SDS (Applied Biosystems) was used to analyze results, and the curves were manually assessed using a threshold at 35 cycles for a positive result. Every run was analyzed with a positive and a negative control.
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2

SARS-CoV-2 vRNA Quantification by RT-PCR

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vRNA was extracted from NFW using the QIAamp Viral RNA Mini Kit according to the manufacturer’s instructions (Qiagen, Qiamp Viral RNA Mini Kit). vRNA was eluted in 60 uL AVE buffer and stored at −80 °C. vRNA was quantified from 4 μL vRNA by RT-PCR using the SensiFAST™ Probe Lo-ROX One-Step Kit (BIOLINE) according to manufacturer’s protocol with the CDC influenza virus real-time RT-PCR influenza A(H1/H3/H1 pdm09) subtyping panel (RUO) (LOT: 12–0134) (influenza A Matrix primers and probes), obtained through the International Reagent Resource, Influenza Division, WHO Collaborating Centre for Surveillance, Epidemiology and Control of Influenza, Centers for Disease Control and Prevention, Atlanta, GA). The RT-PCR consisted of 1 cycle of 45 °C for 10 min and 95 °C for 2 min and 45 cycles of 95 °C for 5 s, 60 °C for 30 s using the 7500 Fast Real-Time System (Applied Biosystems), and 7500 Fast System SDS Software version 1.4.0. The threshold was automatically set and Ct determined. Samples, no-template controls and positive plasmid controls were included in each real time RT-PCR assay. The detection limit was 10 copies of M gene as previously determined (Kendal and Skehel, 1982 ). Copy number was calculated using a plasmid standard curve.
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