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Dc lowry assay

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The DC Lowry assay is a colorimetric protein quantification method developed by Bio-Rad. It is used to measure the total protein concentration in a sample. The assay is based on the Lowry method, which involves a two-step chemical reaction that results in the formation of a blue-colored complex that can be measured spectrophotometrically.

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11 protocols using dc lowry assay

1

Quantifying NCI-006 Levels and LDH Activity

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Tumors were harvested and snap frozen between 1 and 3 h following the final dose of NCI-006. Measurement of tumor and plasma concentrations of NCI-006 was by mass spectrometric analysis with internal standards (pure NCI-006) and was performed by Quintara Discovery (Hayward, CA, USA). For measurement of LDH activity, frozen tissues (10–50 mg) were pulverized using a liquid nitrogen-cooled steel mortar and transferred to pre-cooled Eppendorf tubes. PBS, pH 7.4 (10 volumes) containing 0.1% Triton X-100 was added to each tissue sample prior to incubation on ice for 60 min. Samples were mixed by vortexing every 15 min. The insoluble fraction was removed by centrifugation at 13,000 rpm for 15 min at 4°C. Cleared homogenates were transferred to fresh tubes and protein content was determined by DC Lowry assay (Bio-Rad, Hercules, CA, USA). LDH activity was measured spectrophotometrically in tissue homogenates by monitoring the rate of oxidation of NADH at 340 nm over time in the presence of 10 mM pyruvate. Reactions were performed at 37°C in PBS, pH 7.4 containing 0.1% Triton x-100.
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2

Quantifying NCI-006 Levels and LDH Activity

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Tumors were harvested and snap frozen between 1 and 3 h following the final dose of NCI-006. Measurement of tumor and plasma concentrations of NCI-006 was by mass spectrometric analysis with internal standards (pure NCI-006) and was performed by Quintara Discovery (Hayward, CA, USA). For measurement of LDH activity, frozen tissues (10–50 mg) were pulverized using a liquid nitrogen-cooled steel mortar and transferred to pre-cooled Eppendorf tubes. PBS, pH 7.4 (10 volumes) containing 0.1% Triton X-100 was added to each tissue sample prior to incubation on ice for 60 min. Samples were mixed by vortexing every 15 min. The insoluble fraction was removed by centrifugation at 13,000 rpm for 15 min at 4°C. Cleared homogenates were transferred to fresh tubes and protein content was determined by DC Lowry assay (Bio-Rad, Hercules, CA, USA). LDH activity was measured spectrophotometrically in tissue homogenates by monitoring the rate of oxidation of NADH at 340 nm over time in the presence of 10 mM pyruvate. Reactions were performed at 37°C in PBS, pH 7.4 containing 0.1% Triton x-100.
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3

Solubilization of pMMO Membrane Protein

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pMMO was solubilized from the membranes using 1.2 mg of n-Dodecyl β-D-maltoside (DDM) (Anatrace) per 1 mg of protein at 4 °C for 1 h3 (link),4 (link),52 (link). Membranes were pelleted at 100,000×g for 30 min at 4 °C, and the solubilized protein fraction was collected and buffer exchanged into 25 mM PIPES, pH 7.3, 250 mM NaCl, 0.02% DDM using a 100 kDa MWCO Amicon centrifugal concentrator (Millipore). Protein concentrations were measured using the DC Lowry Assay (Bio-Rad) with BSA as a standard.
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4

Immunoblotting of Liver Proteins

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Frozen liver tissues (50–80mg) from mice were homogenized in lysis buffer (10ml/ g tissue) and protein concentration measured using the DC Lowry assay (Bio-Rad). Samples were prepared in Laemmli buffer and denatured at 97°C for 5 mins. Proteins were separated on 8 to 10% gels by SDS-PAGE and PVDF membranes were probed with antibodies against rabbit anti-Cyp2E1 (Abcam ab28146, 1:1000), rabbit anti-pEIF2α (Cell Signaling 3597, 1:1000) and rabbit anti-CHOP(Cell Signaling 5554, 1:1000). HSC-70 (mouse anti-HSC-70, Santa Cruz, sc-7298), was used as the loading control. Protein bands were visualized using ECL prime chemiluminescent development. Differences in chemiluminescent signal intensity were quantified using the ImageJ software.
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5

Isolation of Methanotroph Membranes

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Membranes from the three methanotrophs were isolated following established methods3 (link),4 (link),52 (link). Ten grams of cells were resuspended in 100 mL of 25 mM PIPES, pH 7.3, 500 mM NaCl (Mm. alcaliphilum 20Z) or 250 mM NaCl (Mm. buryatense 5GB1C), supplemented with EDTA-free protease inhibitor tablets (Roche). Resuspended cells were sonicated for 1.5 min with an 1 s on, 3 s off interval at 25% sonication amplitude. Mc. sp. str. Rockwell cells (16 g) were resuspended in 70 mL of 25 mM PIPES, pH 7.3, 250 mM NaCl, supplemented with 500 µM CuSO4•5H2O, and sonicated for 7 min with an 1 s on, 3 s off interval at 25% sonication amplitude. All lysed cells were centrifuged at 8000×g for 1 h at 4 °C. The supernatant was then centrifuged at 100,000×g for 1 h at 4 °C. The resulting membrane pellet was washed twice in a Dounce homogenizer with 25 mM PIPES, pH 7.3., 250 mM NaCl. 1 mL aliquots of membranes (5–10 mg/mL) were flash frozen in liquid nitrogen and stored at −80 °C. Protein concentrations were measured using the DC Lowry Assay (Bio-Rad) with BSA as a standard.
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6

Protein Quantification and Crystallin Analysis

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Protein concentrations were determined using a detergent-compatible (DC) Lowry assay (Bio-Rad) using bovine serum albumin (BSA) dissolved in PBS, pH 7.3 to create a standard curve. Each standard and sample were pipetted in triplicate and averaged. Due to the high concentration of protein in the lens, a 1% dilution in PBS was made each time to estimate the lysate concentrations more accurately. Appropriate dilutions were made for purified crystallin samples.
Area under the curve (AUC) was determined in OriginPro using the Peak Analyzer function. Integration was performed using the minimum absorbance as a baseline. AUC was reported as a percentage of the peak area over total integrated area of the raw data. Normalized chromatograms were not used to determine AUC.
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7

Immunoprecipitation and Western Blot Analysis

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Cells harvested from the transfected cells used in the tethered function assays were harvested in 1× PBS, pelleted, and resuspended in radioactive immunoprecipitation assay buffer (RIPA buffer, 50 mM Tris (pH 8.0), 150 mM NaCl, 1% (v/v) IGEPAL CA-630, 0.5% (w/v) sodium deoxycholate, 0.1% (w/v) sodium dodecyl sulphate) for lysis. Lysates were homogenized using QIAShredder Columns (Qiagen) and sample concentrations were determined using the BioRad DC Lowry assay. Each sample (8 μg total protein) was resolved on 4–20% TGX gradient gels (BioRad) and then transferred to Millipore EMD Immobilon membrane. Transfected NOCT proteins were detected using anti-V5 antibody (Invitrogen, R960–25) and HT was detected using anti-HT antibody (Promega, G9211). Blots were probed using HRP-conjugated Secondary Antibody (Sigma, A1047) and Pierce ECL Western Blotting substrate before exposure to autoradiography film. As a loading control, Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was detected on the same blots using anti-GAPDH antibody (Ambion, AM4300).
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8

Membrane Protein Purification and Characterization

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Frozen cells were resuspended in room-temperature 25 mM PIPES, 250 mM NaCl, pH 7.2 and lysed by sonication (1 s on, 1 s off, 10 min, 90% power setting). The cell debris was removed, and the membranes were isolated and washed as described previously.12 (link) The washed membranes were then resuspended in the PIPES buffer to 300 μM total protein, as determined by the Bio-Rad DC Lowry assay (with BSA as a standard), aliquoted in X-band and Q-band EPR tubes, and frozen in liquid nitrogen until analysis. Membranes were aliquoted, flash frozen in liquid nitrogen, and stored at −80 °C until further purification. Mc. sp. str. Rockwell pMMO was further purified and solubilized as described previously, but with PIPES instead of Tris buffer to avoid copper chelation by the buffer.12 (link) In brief, membranes were solubilized with n-dodecyl β-d-maltopyranoside (DDM), diluted with 25 mM PIPES, 0 M NaCl buffer, pH 7.2, and centrifuged at 100 000g for 1 h, and the soluble fraction was loaded onto a Source 15Q column (GE Healthcare). Fractions were assessed for purity by SDS PAGE, and those deemed pure were collected, concentrated, and flash frozen for later use. The protein concentration was determined by measuring the absorbance at 280 nm and using the extinction coefficient 7.66 × 103 M−1 cm−1.12 (link)
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9

Western Blot Analysis of HCT116 Cells

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For western blots, HCT116 cells from one well of a 96-well plate were lysed in 50 µL radioimmunoprecipitation assay (RIPA) buffer (25 mM Tris–HCl pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS) supplemented with 2x Complete protease inhibitor cocktail (Roche) and lysed using a cell disruptor. Lysates were cleared by centrifugation at 20,000g for 10 min. Protein was quantified using Lowry DC Assay (BioRad) with a bovine serum albumin (BSA) standard curve. Equal mass of each cell extract (20 µg) was separated on a 4%–20% Mini-PROTEAN TGX gel (BioRad) and then transferred to Immobilon P membrane (Millipore) followed by Western blot with the primary antibodies indicated in the figures and detection by enhanced chemiluminescence (Pierce, Millipore). Antibodies are listed in Supplemental Table S5.
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10

Protein Extraction and Immunoblotting Protocol

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Cells were lysed in RIPA buffer (Cell Signaling Technology) supplemented with 1% sodium dodecyl sulfate (SDS, Boston BioProducts), protease inhibitors (cOmplete EDTA-free, Roche) and 100 nM Calyculin A (Cell Signaling Technology). Lysates were homogenized using Qiashredder columns (QIAGEN) and protein concentration was determined using Lowry DC assay (Bio-Rad). The solubilized lysate was denatured in 6× Laemmli SDS loading buffer (Boston BioProducts) at 100°C for 8 minutes. Samples with equal protein concentration were separated using a CriterionTM TGXTM 4–15% gel system (Bio-Rad); transferred to Trans-Blot Turbo, 0.2 μm nitrocellulose membrane (Bio-Rad); and subjected to immunoblotting using standard methods.
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