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8 protocols using 6 benzylaminopurine ba

1

Shoot Induction from Explants Using PGRs

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After 30 days, the healthy explants without contamination, produced from the previously culture step, were subcultured in full- or half-strength MS medium (Murashige and Skoog 1962), supplemented with 6-benzylaminopurine (BA) (Sigma Chemicals, Saint Louis, MO, USA) or thidiazuron (TDZ) (Cayman Chemicals, Ann Arbor, MI, USA) at various concentrations (1.0, 2.0, 4.0 and 8.0 µM), 3% (w/v) sucrose, 0.6% (w/v) agar for multiple shoot induction in glass tubes. The pH of the medium was adjusted to 5.8 with 0.1N NaOH or 0.1N HCl prior to agar addition. The medium, the culture tubes as well as all the equipment used in in vitro operations under aseptic conditions were sterilized by autoclaving (121 °C, 122 kPa) for 20 min. After a 4-week period, the effect of the various concentrations of used plant growth regulators in relation to medium strength on shoot formation percentage (%), number and length of shoots were evaluated. Eight explants in three replications were used for each treatment. All cultures were incubated in a growth chamber at 23 ± 1 °C with 16 h photoperiod, under cool-white fluorescent lamps of 50 μmol m−2 s−1 photosynthetic photon flux density at culture level. Each experiment was arranged in the growth chamber in a completely randomized design.
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2

Phenotyping and Symbiosis Assays on Legume Seedlings

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Phenotyping on growth plates was conducted by transferring 3-day-old seedlings onto filter paper placed on vertical 1.4% agar noble plates containing ¼ Long Ashton (Table S3) in the presence of 5 mM KCl or KNO3. For the cytokinin rescue assay, 6-Benzylaminopurine (BA, Sigma-Aldrich) were added into ¼ Long Ashton plates containing 5 mM KNO3. Three days after transfer, seedlings were inoculated with rhizobia inoculum OD600 = 0.015. Infection threads were counted at 7 day post inoculation (dpi) using a Zeiss axioplan fluorescence microscope, while nodule numbers were counted at 14 dpi. For nitrate and RNA-seq, 3-day-old seedlings were transferred on ¼ B&D plates and grown for 14 days.
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3

Agrobacterium-Mediated Potato Transformation

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Potato transformation was conducted according to the protocol described in Ginzberg et al. (2012) (link) with minor modifications. Sterile potato leaf discs were incubated with Agrobacterium for 5–10 min and then shifted to MS medium containing 3% sucrose (Suc; Duchefa), 200 µM acetosyringone (AS; Sigma-Aldrich, Israel) for 2 d in the dark. Explants were then transferred to MS+3% Suc with 0.1 mg l–1 6-benzylaminopurine (BA; Sigma-Aldrich), 5 mg l–1 naphthalene acetic acid (NAA; Duchefa) supplemented with 500 mg l–1 Claforan (Cla; Cefotaxim, Duchefa) and 50 mg l–1 kanamycin (Kan; Duchefa). Plates were incubated (25 °C, 16/8 h light/dark photoperiod) for 10 d. Then, explants were shifted to selection medium [MS, 3% Suc, 2 mg l–1 zeatin riboside (Duchefa), 0.02 mg l–1 gibberellic acid (GA3; Duchefa), 0.02 mg l–1 NAA, 500 mg l–1 Cla, and 50 mg l–1 Kan]. After ~6 weeks, plantlets were transferred to rooting medium (MS, 3% Suc, 500 mg l–1 Cla and 50 mg l–1 Kan). Rooted plantlets were transferred to soil and were kept for a 10 d hardening before they were transferred to a greenhouse.
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4

Melatonin Detection in Rice Seedlings

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The 7-day-old rice seedlings in 50 mL polypropylene conical tubes containing 30 mL water were first treated with varying levels of epibrassinolide (BR; Sigma-Aldrich, St. Louis, MO, USA), ethephon (Sunmoon Green Science, Seoul, Korea), 6-benzylaminopurine (BA; Sigma-Aldrich), and indole-3-acetic acid (IAA; Sigma-Aldrich). The BR biosynthesis inhibitor brassinazole (100 µM; Sigma-Aldrich) and GA biosynthesis inhibitor paclobutrazol (10 µM; Sigma-Aldrich) were used to inhibit BR and GA biosynthesis, respectively. GA3 was purchased from Duchefa Biochemie (Harrlem, The Netherlands). BR, BA, and IAA were dissolved in 0.1% ethanol. The control (C) contained 0.1% ethanol in water, except for ethephon, where the control was water. Treatments were applied for 1 day under cool daylight fluorescent lamps (60 μmol m–2 s–1) (Philips) with a 14 h light/10 h dark photoperiod at 28 °C/24 °C (day/night), followed by treatment with 0.5 mM CdCl2 for 3 days under continuous light conditions (60 μmol photons m–2 s–1) for melatonin detection by high-performance liquid chromatography (HPLC). The upper parts of leaves and stems were harvested and stored in liquid nitrogen for further analyses.
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5

In Vitro Propagation of Sinningia Hybrids

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Sinningia hybrida ‘Isa’s Murmur’ was purchased from Horticulture Co., Ltd. in Sichuan. The plant was certified by Professor Minghua Luo of Mianyang Normal University. Leaf was excised from mature greenhouse-grown plantlets. Explants were initially rinsed for 30 min employing water, and then surface-sterilized, adopting 75% ethanol, for 15 s before 0.1% (w/v) HgCl2-mediated disinfection for 5 min, then rinsed five times, applying distilled water.
They were placed on Murashige and Skoog (MS) basal medium [46 (link)] with different plant growth regulators (PGRs) for shoot induction. All culture medium contained 3% (w/v) sucrose and 0.7% agar. The pH of media was adjusted to 5.6 with 0.1 mol L−1 NaOH before autoclaving for 15 min at 121 °C. All PGRs (thidiazuron (TDZ), zeatin (ZT), kinetin (Kin), 6-benzylaminopurine (BA), 3-Indole-butyric acid (IBA), naphthalene acetic acid (NAA), and Gibberellin A3 (GA3) were purchased from Sigma-Aldrich (St. Louis, MI, USA). The cylindrical culture bottle had a diameter of 7.0 cm and a height of 8.0 cm. All explants and plantlets were cultured at 25 ± 1 °C under a 12 h light cycle with a light intensity of 30 µmol m−2 s−1. At the same time, we selected the different length of experiments according to the development time of adventitious shoots, which is different to that of adventitious roots.
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6

Leaf Senescence Assay Protocol

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The third and fourth leaves of 3-week-old plants were harvested and floated on 3 mM MES (pH 5.7). The samples were incubated at 22 °C in the dark for up to 11 d. The photochemical efficiency of PSII (Lee et al., 2016 (link)) and chlorophyll content (Vernon, 1960 ) of leaves were measured as described previously. For chemical- or plant hormone-mediated senescence assay, detached leaves were floated abaxial side up in 3 mM MES (pH 5.7) with or without 50 μM 1-aminocyclopropane-1-carboxylic acid (ACC; Sigma, USA), 0.2 μM 6-benzylaminopurine (BA; Sigma, USA), 100 mM sodium chloride (Samchun, Korea), or 10 mM hydrogen peroxide (Junsei, Japan). All treatments were performed at 22 °C in the dark. Photochemical efficiency and chlorophyll content were measured as described above. For developmental leaf senescence assays, the third and fourth rosette leaves at the indicated leaf age were harvested from individual plants and used for measurements of chlorophyll content, photochemical efficiency, and gene expression. Leaves used for gene expression and microarray experiments were harvested 4 h into the subjective day.
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7

Asymbiotic Seed Germination Optimization

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Seeds collected at 105 DAP were used to investigate the influence of cytokinins on asymbiotic germination. In this experiment, modified Norstog medium was supplemented with either 6-(γ,γ-dimethylallylamino)purine (2iP, Sigma-Aldrich Co.), 6-benzylaminopurine (BA, Sigma-Aldrich Co.) or kinetin (KN, Sigma-Aldrich Co.) at concentrations of 1, 2, 4 and 8 μM. Modified Norstog medium without cytokinin supplementation was used as a control.
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8

Rhizobial Infection Assay on Growth Plates

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Phenotyping on growth plates was conducted by transferring 3-d old seedlings onto filter paper placed on vertical 1.4% agar noble plates containing ¼ Long Ashton (table S3) in the presence of 5 mM KCl or KNO 3 . For the cytokinin rescue assay, 6-Benzylaminopurine (BA, Sigma-Aldrich) were added into ¼ Long Ashton plates containing 5 mM KNO 3 . 3 days after transfer, seedlings were inoculated with rhizobia inoculum OD 600 =0.015. Infection threads were counted at 7 day post inoculation (dpi), while nodule numbers were counted at 14 dpi. For nitrate and RNA-seq, 3-d old seedlings were transferred on ¼ B&D plates and grown for 14 days.
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