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11 protocols using 4 6 diamidino 2 phenyindole dapi

1

Immunofluorescent Analysis of Myotube Formation

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Differentiated C2C12 cells were fixed in 4% paraformaldehyde for 15 minutes, washed twice with phosphate buffered saline (PBS), permeabilized in 0.01 M sodium citrate buffer containing 0.1% Triton X-100 for 10 minutes, and washed twice with PBS. The cells were blocked with 2% bovine serum albumin (BSA) in PBS for 1 hour and subsequently incubated with anti-myosin heavy chain (MyHC) antibody (MF20; Developmental Studies Hybridoma Bank, Iowa City, IA, USA) at 4°C overnight. Cells were incubated with Alexa Flour 555-conjugated secondary antibodies (Cell Signaling, Danvers, MA, USA; 1:1,000 dilution) for 1 hour and washed with PBST (0.2% Tween-20 in PBS). Thereafter, they were incubated with 4,6-diamidino-2-phenyindole (DAPI; Sigma-Aldrich, St. Louis, MO, USA; 1:10,000 dilution) for 2 minutes and washed with PBS. The samples were mounted using Fluoromount G (Southern Biotech, Birmingham, AL, USA) and images were captured using a fluorescence microscope (Carl Zeiss, Jena, Germany). The area of the MyHC-stained myotubes was calculated using the ZEN 2 (blue edition) software (Carl Zeiss). Fusion index (%) was calculated using the following equation: 100×number of nuclei in MyHC+ myotubes per total number of nuclei in MyHC+ myocytes and myotubes.
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2

Quantifying Nrf2 Localization in pbMECs

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pbMECs were seeded on 24-well plates at 1 × 104 cells/well. After treatments, the cells were fixed with 4% paraformaldehyde followed by permeabilization in 0.25% Triton X-100 in PBS. After incubated with 5% bovine serum albumin (BSA), the cells were probed with a primary antibody against Nrf2 (1:1000, HUABIO, Hangzhou, China) overnight at 4 °C. Then the cells were incubated with an Alexa Fluor 594-conjugated secondary antibody (1:1000, Abcam, Cambridge, UK). Cells nuclei was visualized with 4,6-diamidino-2-phenyindole (DAPI, Sigma-Aldrich, St. Louis, MO, USA). Cytosolic and nuclear Nrf2 location was examined using a fluorescence microscope (Nikon Eclipse Ti-S, Tokyo, Japan).
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3

NF-κB Activation Assay in RAW264.7 and HepG2 Cells

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RAW264.7 cells were pretreated in 96-well plates with LPS (1 μg/mL) for 15 min and then treated with 96 for 2 h. Similarly, HepG2 cells were pretreated with TNF-α (10 ng/mL) for 15 min and then treated with 96 for 4 h. The cells were fixed with 2% paraformaldehyde for 15 min at 37 °C and permeabilized using 0.1% Triton X-100 for 10 min at RT. After blockage with 3% BSA for 30 min, the cells were incubated with anti-NF-κB p65 antibody (NOVUS BIOLOGICALS, Colorado, USA) at 4 °C overnight. After washing, the anti-mouse Alexa488-conjugated secondary antibody (Jackson Immuno Research, West Grove, PA) was incubated for 30 min at RT. After washed with PBS, the cells were incubated in 4-6-diamidino-2-phenyindole (DAPI; Sigma, St. Louis, MO) for 15 min in the dark at RT. The cell images were simultaneously viewed using a microscopy system in High Throughput Screen (Operetta, PerkinElmer, Waltham, MA).
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4

Evaluation of Fisetin and DAPI in Cancer Cell Lines

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Fisetin and 4′,6-diamidino-2-phenyindole (DAPI), and paclitaxel were purchased from Sigma (St. Louis, MO); PC-3, DU-145 cells and dimethyl sulfoxide (DMSO) from ATCC (Manassas, VA). NCI/ADR-RES cell line was obtained from the DTP Human Tumor Cell Line Screen (Developmental Therapeutics Program, NCI, Frederick, MD). RPMI-1640 media, fetal bovine serum, penicillin, and streptomycin from Mediatech, Inc (Manassas, VA); α-tubulin and acetylated α-tubulin from Santa Cruz (Dallas, TX); FITC-conjugated goat anti-mouse antibody and anti-mouse, anti-rabbit secondary antibody conjugated to horseradish peroxidase and BrdU Cell Proliferation Assay Kit from Cell Signaling (Danvers, MA); β-tubulin, MAP-2, MAP-4, NudC and GAPDH from Abcam (Cambridge, MA); antifade agent Prolong Gold-DAPI from Life Technologies, Inc. (Grand Island, NY); pure tubulin, OD based-Porcine (BK006P) proteins from Cytoskeleton (Denver, CO); Chemicon cell invasion assay kit from Millipore (Billerica, MA); FITC-dUTP from BD Pharmingen™ (San Jose, CA); anti-GST antibodies from GE Healthcare Life Sciences (Piscataway, NJ). All chemicals were stored as aliquots of 100 mM stock solutions in DMSO at −20 °C.
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5

Immunofluorescence Analysis of NRF2 in MSCs

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EP, LP, undifferentiated, differentiated, OTA-, or t-BHQ-treated MSCs were seeded at 5000 cells/cm2 on 4-well glass chamber slides (Nalge Nunc International, Rochester, NY, USA), and the cells were incubated in a 5% CO2 incubator at 37 °C. After an overnight incubation, the cells were washed with PBS followed by fixation with 4% paraformaldehyde (Sigma) for 30 min. Permeabilization was accomplished with 1% Triton X-100 in PBS for 10 min followed by blocking for 1 h with 3% bovine serum albumin (BSA) in PBS. The cells were incubated with a 1 : 200 dilution of primary antibodies against NRF2 (Santa Cruz Biotechnology) overnight at 4 °C. After washing three times with PBS, the cells were incubated with fluorescein isothiocyanate (FITC) and phycoerythrin-conjugated secondary antibodies (Santa Cruz Biotechnology) or Alexa Fluor 568 (Yellow, Abcam) in a 1 : 5000 dilution in 3% BSA-containing PBS for 1 h at room temperature in the dark. The nuclei were stained with 4,6-diamidino-2-phenyindole (DAPI, Sigma) and then examined using a Zeiss LSM700 scanning laser confocal microscope (Zen 2011; Carl Zeiss MicroImaging GHBH, Jena, Germany).
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6

Immunohistochemical Analysis of Mouse Utricle

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Cultured utricles from adult C57BL/6 mice were fixed for 20 min. in 4% paraformaldehyde (PFA; in 0.1M phosphate buffer, pH=7.4). Specimens were then thoroughly rinsed with phosphate-buffered saline (PBS) and incubated for two hours in PBS with 5% normal horse serum (NHS) and 0.2% Triton X-100, in order to block nonspecific antibody binding. Hair cells were labeled with an antibody against myosin VIIa (rabbit polyclonal; 1:500; Proteus Biosciences). Nuclei with damaged DNA were identified using an antibody against p-H2AX (1:500; Millipore). Specimens were maintained in primary antibodies overnight at 4°C. Following treatment in primaries, the specimens were thoroughly rinsed in PBS and incubated for two hours in either Alexa-488 donkey anti-mouse, Alexa-546 donkey anti-rabbit, or Alexa-546 donkey anti-goat secondary antibodies (1:500; all Invitrogen) for two hours. Nuclei were stained with 4',6-Diamidino-2-phenyindole (DAPI; Sigma-Aldrich, 2.7 µM). Cell-cell junctions in some cultured utricles were visualized by incubation in Alexa-488 conjugated phalloidin (Invitrogen). Specimens were mounted on glass slides in 90% glycerol/ 10% PBS and coverslipped.
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7

Quantification of Myotube Formation

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Differentiated C2C12 cells were fixed in 4% paraformaldehyde (PFA) for 15 minutes, washed twice with phosphate-buffered saline (PBS), permeabilized in 0.01 M sodium citrate buffer containing 0.1% Triton X-100 for 10 minutes, and washed twice with PBS. The cells were blocked with 2% bovine serum albumin (BSA) in PBS for 1 hour and subsequently incubated with anti-myosin heavy chain (MyHC) antibody (MF20, Developmental Studies Hybridoma Bank, Iowa City, IA, USA) at 4°C overnight. The cells were incubated with Alexa Fluor 555-conjugated secondary antibodies (1:1,000 dilution, Cell Signaling, Danvers, MA, USA) for 1 hour and washed with 0.2% Tween-20 in PBS. Thereafter, they were incubated with 4,6-diamidino-2-phenyindole (DAPI, 1:10,000 dilution, Sigma-Aldrich) for 2 minutes and washed with PBS. The samples were mounted using Fluoromount G (Southern Biotech, Birmingham, AL, USA) and images were captured using a fluorescence microscope (Carl Zeiss, Jena, Germany). The area of the MyHC-stained myotubes was calculated using the ZEN 2 (blue edition) software (Carl Zeiss). Fusion index (%) was calculated using the following equation: 100×number of nuclei in MyHC+ myotubes per total number of nuclei in MyHC+ myocytes and myotubes [17 (link)].
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8

Lack Antigen Immunofluorescence Staining

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The Lack antigen was produced and purified by the Recombinant Protein platform (UMR144, Institut Curie, Paris, France). Lack peptide (aa 156-173) was synthetized by PolyPeptide Group. LPS from Salmonella enterica serotype typhimurium and recombinant rat Galectin-8 were purchased from Sigma-Aldrich. Cypher5E was purchased from GE Healthcare.
The following primary antibodies were used for immunofluorescence: rabbit anti-γ-Tubulin (Abcam, #Ab11317, 1/1000), rat anti-Lamp-1 (CD107a; BD PharMingen, #553792, 1/400), polyclonal rabbit anti-OVA (1/500), AlexaFluor647-conjugated rat anti-CD169 (AbD Serotec, #MCA974A647, 1/50). The following secondary antibodies were used: Cy3-conjugated F(ab’)2 donkey anti-rabbit (Jackson ImmunoResearch, 1/200) and AlexaFluor488- and 647-conjugated donkey anti-rat (Life Technologies, 1/200). 4’,6-Diamidino-2-phenyindole (DAPI, Sigma Aldrich, 1/5000) was used to counterstain nuclei.
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9

Dexamethasone-Induced Muscle Atrophy Assay

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C2C12 or HSMM cells were grown on coverslips (SPL Life sciences, Phocheon-si, Korea, Cat#20018). To evaluate the protective effects of CCL2 or hCCL2 on dexamethasone-induced muscle atrophy, differentiated MTs were cotreated with recombinant CCL2 or hCCL2 (100, 200 ng/ml) and dexamethasone (200 μm) for 24 hours. C2C12 or HSMM MBs and MTs were fixed in ice-cold 4% PFA for 15 min, washed three times with PBS, and incubated in ice-cold 0.25% Triton X-100 at room temperature for 10 min [49 (link)]. Then, cells were blocked with blocking solution (1% BSA in PBS) and washed three more times. Next, cells were incubated overnight in anti-MyHC (1:400, Sigma Aldrich, St. Louis, MO, USA) at 4° C. Following three washes in PBS, the cells were incubated with Alexa 555–labeled anti-mouse IgG antibodies (1:1000, Cell Signaling, MA, USA) for 60 min. Then, cells were stained with 4, 6-diamidino-2-phenyindole (DAPI, 1:5000, Sigma Aldrich, St. Louis, MO, USA) for 10 min and washed with PBS three times. The images were produced using an LMS800 fluorescence microscope (Carl Zeiss, Oberkochen, Germany). The fusion index (%) was calculated using the following equation: 100×number of nuclei in MyHC+ MTs per total number of nuclei in MyHC+ myocytes and MTs.
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10

Immunocytochemistry of SOX-9 Expression

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For immunocytochemistry experiments, cells were grown on coverslips. After incubation, cells were fixed in paraformaldehyde 4% and permeabilized with 0.2% Triton-X100 for 10 min. After blocking with 3% BSA for 1 h, they were incubated with anti-SOX-9 ([1:100]; Millipore) overnight at 4 °C. Then, they were incubated for 1 h with the secondary antibody AlexaFluor® 488 conjugated rabbit anti-mouse secondary antibody ([1/300]; Invitrogen; Waltham, MA, USA). Nuclei were stained with 4′,6-Diamidino-2-phenyindole (DAPI, Sigma-Aldrich; Saint Louis, MO, USA) as a control for equal cell density. The absence of a primary antibody was used as a negative control. Samples were mounted in Mowiol 40–88 (Sigma-Aldrich) and examined by a Leica TCS SP5 confocal microscope.
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