The largest database of trusted experimental protocols

Bicinchoninic acid protein assay

Manufactured by Merck Group
Sourced in United States, Germany

The Bicinchoninic acid (BCA) protein assay is a colorimetric detection and quantitation method for determining the total protein concentration in a sample. It utilizes the reduction of Cu2+ to Cu+ by protein in an alkaline medium, with the cuprous cation detected using a reagent containing bicinchoninic acid.

Automatically generated - may contain errors

40 protocols using bicinchoninic acid protein assay

1

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Proteins were extracted from the cells using lysis buffer (50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 10 µg/mL aprotinin, 10 µg/mL leupeptin, 5 mM phenylmethylsulfonyl fluoride, and 1 mM DTT) containing 1% NP-40. Lysates were centrifuged at 10,000× g for 10 min at 4 °C. Protein concentrations were determined using a bicinchoninic acid protein assay (Sigma, Steinheim, Germany) according to the manufacturer’s instructions. Twenty micrograms of protein were separated by electrophoresis using 10% SDS–polyacrylamide gel and then transferred to polyvinylidene fluoride membranes (Amersham, UK). Membranes were subsequently blocked with 1% nonfat dry milk in Tris-buffered saline Tween 20 (TBST) at room temperature and incubated with p-JNK antibody (Cell Signaling Technology, Beverly, MA, USA) with 1% bovine serum albumin in TBST overnight at 4 °C, followed by incubation for 60 min at room temperature with HRP-conjugated secondary antibody. Proteins were visualized by enhanced chemiluminescence (Amersham, UK).
+ Open protocol
+ Expand
2

Pneumococcal Infection in Nrf2 Knockout Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
At 6 or 24 h after instillation of S. pneumoniae (5.8-15 × 106 CFUs/mouse) in Nrf2 null and WT mice, the pulmonary vasculature was flushed with PBS, and a single BAL was performed by instilling 0.9 ml PBS containing 2 mM EDTA per 22 g mouse body weight into the lungs through the trachea. BAL fluid was spun at 300 x g at 4°C for 5 minutes, and the cell-free supernatant was collected and stored at -80°C until use. Thawed samples were spun at 15,000 x g for 2 minutes at 4°C, and the supernatant was collected and aliquoted for use in subsequent assays. Total protein was measured using the Bicinchoninic Acid Protein Assay according to the manufacturer’s instructions (Sigma-Aldrich or Thermo Fisher Scientific, Waltham, MA). The levels of 23 cytokines/chemokines were measured using a multiplex assay on the Bio-Plex MAGPIX platform (Bio-Rad, Hercules, CA, USA). The levels of soluble RAGE, S100A8 and S100A9 were measured using a custom multiplex magnetic bead-based assay (R&D Systems, Minneapolis, MN) on the Luminex platform (Luminex, Austin, TX). Soluble ICAM-1 (sICAM-1, CD54) was measured using an ELISA (R&D Systems). Extracellular double-stranded DNA was measured using Quant-iT PicoGreen dsDNA Assay Kit (Life Technologies, Grand Island, NY).
+ Open protocol
+ Expand
3

Cellular Protein Extraction and Digestion Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
A375 wild-type (WT) and 3G8 melanoma cells were collected, washed in 1x phosphate-buffered saline (PBS), resuspended in RIPA buffer (50 mM Tris-HCl pH 8.0 with 150 mM NaCl, 1.0% Igepal CA-630, 0.5% sodium deoxycholate and 0.1% sodium dodecyl sulfate, Sigma-Aldrich) supplemented with a protease inhibitors cocktail 1x (Roche) and sonicated for 5–6 cycles. The lysate was gently mixed for 15 min and then centrifuged at 14,000 × g for 15 min at 4 °C to pellet cell debris. The supernatant was collected and total protein concentration was determined using a bicinchoninic acid protein assay (Sigma-Aldrich). Before mass spectrometry (MS) analysis, proteins were digested by trypsin following the protocol previously described19 (link).
+ Open protocol
+ Expand
4

Isolation of Nuclear Proteins from Rat Liver

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen rat liver tissues (20–40 mg) were rinsed in PBS buffer and then transferred to a Dounce tissue grinder (Wheaton Manufacturers, NJ). Solution A (10 mM HEPES pH 7.9, 10 mM KCl, 0.1 mM EDTA, 0.1 mM EGTA, 1 mM DTT, 0.5 mM PMSF) was then added to the tissues (2.5 g/ml). Tissues were homogenized with five strokes of a pestle and after adding NP-40 (0.5%), then further homogenized with an additional five strokes. Homogenates were transferred to Eppendorf tubes and centrifuged in a microcentrifuge (Beckman) for 5 min at 12000 rpm.
Supernatants contained predominantly cytoplasmic constituents. To obtain nuclear pellets, 400 μl of solution C (20 mM HEPES pH 7.9, 0.4 M NaCl, 1 mM of each of EDTA, EGTA, DTT, and PMSF) was added to supernatants. Tubes were mixed thoroughly and placed on a small rotatory shaker for 15 min. Finally, they were centrifuged at 12000 rpm for 10 min in a microcentrifuge. Supernatants, which contained nuclear proteins, were then removed, transferred carefully to fresh tubes, and stored at −80 °C until required for Western blotting. Protein contents were determined using the Bicinchoninic Acid Protein Assay (Sigma).
+ Open protocol
+ Expand
5

Western Blot Protein Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted by lysing cells in radio-immunoprecipitation assay (RIPA) lysis buffer (GenDEPOT, Barker, TX, USA) containing a protease inhibitor cocktail (GenDEPOT) for 30 min on ice. The protein concentration was determined using a bicinchoninic acid protein assay (Sigma-Aldrich). Equal amounts of protein were loaded onto a 12% (v/v) sodium dodecyl sulfate-polyacrylamide gel for electrophoresis. The separated proteins were blotted onto a polyvinylidene fluoride membrane (Amersham Biosciences, Piscataway, NJ, USA). Membranes were first blocked with 3% BSA in Tris-buffered saline with 0.1% Tween-20 at RT for 1 h and then incubated overnight at 4 °C with primary polyclonal antibodies (1:1000 dilution; Table 2). The blots were then incubated with peroxidase-conjugated anti-mouse and anti-rabbit secondary antibodies (7076 and 7074, respectively, Cell Signaling Technology, Danvers, MA, USA) diluted at 1:10,000 for 1 h at RT. The target proteins were visualized using an enhanced chemiluminescence kit (Amersham Biosciences), imaged using an Amersham Imager 680 (Amersham Biosciences) and quantified with ImageJ software. The density of each band was normalized to that of β-actin.
+ Open protocol
+ Expand
6

Western Blot Analysis of SNc Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Animals were sacrificed by decapitation and SNc area was rapidly removed and frozen on dry ice, and stored at −80 °C. Protein lysate was obtained by re-suspending SNc in ice-cold lysis buffer (CelLytic, Sigma, USA) containing diluted phosphatase (1:10, Roche, Monza, Italy) and protease inhibitors (1:25, Roche, Italy). After centrifugation, the supernatant was collected and protein concentration was measured using a Bicinchoninic Acid Protein Assay (Sigma, USA). Protein lysates were run on 10% gels, transferred onto nitrocellulose membranes (Biorad, USA) and western blot was performed. Membranes were blocked (Odyssey blocking buffer, LiCor, USA) and incubated overnight with the following primary antibodies: anti-GFAP (1:2000, Sigma, USA, G3893), anti-TRPV1 (1:500, Santa Cruz, USA); anti-CNTF (1:500, Millipore, Germany, MAB338). As secondary antibodies, anti-mouse 1:10000 secondary IgG HRP-Conjugated were used. Image analysis of western blots was performed using Azure 600 azure biosystems and software (LiCor, Biosciences, Rockville, MD, USA) and signal was normalized with the corresponding GFAP signal.
+ Open protocol
+ Expand
7

Fluorometric Assay of ACE2 Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
The activity of ACE2 was determined in abdominal aorta lysates using a fluorometric assay kit (Angiotensin II Converting Enzyme Activity Assay Kit, BioVision, Inc., Milpitas, CA, USA). Frozen aortae were homogenized using a glass Teflon homogenizer in lysis buffer in accordance with the manufacturer’s instructions, and lysates obtained by centrifugation at 16,000× g/10 min/4 °C were used to measure the protein concentration (bicinchoninic acid protein assay; Sigma-Aldrich, St. Louis, MO, USA) and ACE2 activity. The assay procedure utilizes the ability of active ACE2 to cleave a synthetic MCA-based peptide substrate to release free MCA (7-methoxycoumarin-4-acetate), quantified using a fluorescence microplate reader (Synergy™ H4 Hybrid Reader; BioTek, Winooski, VT, USA) and enzyme kinetic measurements over 120 min at room temperature with data collection in 5-minute intervals at wavelengths Ex/Em = 320/420 nm. Enzyme kinetics were measured in the absence (negative control) or presence of an ACE2-specific inhibitor to distinguish ACE2 activity from other proteolytic activities.
+ Open protocol
+ Expand
8

Retinal Mitochondria and Cytosol Isolation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mitochondria and cytosol were isolated from retina using mitochondria isolation kit from Invitrogen (Carlsbad, CA, USA), according to the vendor's protocols. As reported previously, mitochondria prepared by this method are largely devoid of contaminations (Madsen-Bouterse, Mohammad et al. 2010 (link); Santos, Tewari et al. 2011 (link); Tewari, Santos et al. 2012 (link)). To isolate the cytosol fraction, the homogenate was centrifuged at 105,000×g for 90 minutes. Protein was estimated by the bicinchoninic acid protein assay (Sigma-Aldrich, St Louis, MO).
+ Open protocol
+ Expand
9

Western Blot Analysis of Liver Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue and cells were lysed in RIPA Buffer (100 mg tissue/0.5 mL RIPA supplemented with protease, and phosphatase inhibitors (10 μL/mL, Sigma-Aldrich, St. Louis, MO). Protein concentration was determined by the bicinchoninic acid protein assay (Sigma-Aldrich, St. Louis, MO). Protein (15 μg) was separated on 7.5% SDS Gel (BioRad, Hercules, CA), transferred to polyvinylidene difluoride membranes. Membranes were incubated in phosphate buffered saline (PBS), pH 7.5 containing 1% Tween 20 (PBS-T) and 5% fat free Milk for 1 hour at room temperature. Membranes were incubated at 4° C overnight with a primary antibody then washed followed by incubation with secondary antibody (Cell Signaling Technology, Danvers, MA). Membranes were incubated with ECL (Thermo Scientific, Waltham, MA) and luminescent signals were captured with BioRad Chemidoc Imaging System (Hercules, CA). For detection of phosphoproteins, the phospho-antibody blots were stripped for 15 minutes in Restore PLUS Western Blotting Stripping Buffer (Thermo Scientific, Waltham, MA) then re-probed using primary antibody against total protein overnight in 5% FF Milk in PBS-T. The following antibodies were used and purchased from Abcam (Cambridge, MA): Hnf4α, Nrf2, Y1173 EGFR; Thermo-scientific (Waltham, MA): S313 Hnf4α; Cell Signaling Technology (Danvers, MA): β-actin; and Santa Cruz (Dallas, TX) EGFR.
+ Open protocol
+ Expand
10

Glutamyl Aminopeptidase and Superoxide Dismutase Activity Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Activity of glutamyl aminopeptidase was determined in the membrane fraction. Skeletal muscle and epididymal adipose tissue were homogenized using a glass Teflon homogenizer in lysis buffer (250 mM saccharose, 10 mM Tris, pH 7.4). The homogenates were centrifuged at 1,000 × g/10 min/4°C. The supernatants were collected and centrifuged at 16,000 × g/15 min/4°C to separate the membrane fraction. Protein concentration was measured by the Bicinchoninic Acid Protein Assay (Sigma-Aldrich, St. Louis, MO, United States). Prepared samples were mixed with substrate solution containing 100mM H-Glu-β-naphthylamide (Bachem, Bubendorf, Switzerland), 10 mg/100 ml bovine serum albumin, 10 mg/100 ml dithiothreitol, 50 mM CaCl2 in 50 mM Tris pH 7.4. The 96-well plate was placed in a Synergy H4 Hybrid Reader (BioTek, Winooski, VT, United States) fluorimeter and the enzyme kinetics was measured during 60 min at 37°C with data collection in 5-min intervals as the amount of β-naphthylamide released from the substrate due to the enzyme activity of AP-A at wavelengths 340 nm (excitation) and 410 nm (emission).
Superoxide dismutase activity was measured in skeletal muscle tissue samples by colorimetric SOD Activity Assay Kit (Abcam, Cambridge, United Kingdom). Tissue homogenization and assay procedure were performed in accordance with the manufacturer’ protocol.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!