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20 protocols using anti cd8a

1

Dnmt3a knockout immune cell analysis

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Spleen and thymus were collected from WT, Dnmt3a1−/− or Dnmt3a2−/− mice at P21, and single cell suspensions were generated by trituration and filtration through 40-μm nylon cell strainers (Corning Falcon). Cells were stained with fluorochrome-labeled antibodies at room temperature for 20 min, washed and analyzed on an LSR II flow cytometer (BD). All antibodies used in flow cytometry were purchased from BD or Thermo Fisher Scientific (eBioscience) and used at 1:100 dilution: anti-CD4, eFluor 450 (48-0042-82); anti-CD8a, eFluor 450 (48-0081-82); anti-CD45R, eFluor 450 (48-0452-82); anti-CD11b, PE-Cy7 (25-0112-82); anti-Gr-1, PE-Cy7 (25-5931-82); anti-CD45R, PE-Cy7 (25-0452-82); anti-CD4, FITC (11-0041-85); anti-CD8a, PE (BD, 553033). Flow cytometry data were processed using FlowJo software (v10.7.1).
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2

Evaluating the Impact of DBT on Murine Blood and Splenocytes

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Murine blood and spleens were collected to evaluate the influence of DBT to peripheral blood cells and splenocyte differentiation. The counts of peripheral blood cells were calculated by using a Sysmex K-1000 automated hematology analyzer (Sysmex American, Lincolnshire, IL, USA). The differentiation of splenocytes was evaluated by flow cytometry. The spleen was treated with 2 ml RBC lysis buffer to isolate splenocytes. The BD FACSCantoTM II system (BD, San Jose, CA, USA) was used for cytometry. Murine anti-CD3ε (BD, San Jose, CA, USA), anti-CD4 (BD, San Jose, CA, USA), anti-CD8a (BD, San Jose, CA, USA), anti-CD19 (BD, San Jose, CA, USA), and anti-CD56 (Bioss, Woburn, MA, USA) antibodies were used to label total T, Th, cytotoxic T (Tc), B, and natural killer (NK) cells, respectively. The antibodies were stained by FITC (fluorescein isothiocyanate) and PE (phycoerythrin).
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3

Multicolor Flow Cytometry Panel for Immune Cell Profiling

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Cells were stained with the following fluorochrome-conjugated antibodies: anti-B220 (eBioscience, clone RA3-6B2), anti-CD3e (eBioscience, clone 145-2C11), anti-CD8a (BD, clone 53-6.7), anti-CD11b (eBioscience, clone M1/70), anti-CD11c (Bio Legend, clone N418), anti-CD14 (Bio Legend, clone SA14-2), anti-CD19 (eBioscience, clone eBio1D3), anti-CD64 (Bio Legend, clone X54-5/7.1), anti-CD68 (AbD Serotec, clone FA-11), anti-CD163 (Bioss, polyclonal), anti-CD115 (eBioscience, clone AF598), anti-CCR3 (Bio Legend, clone J073E5), anti-F4/80 (Bio Legend, clone CI:A3-1), anti-FPR-1 (Bioss, polyclonal), anti-MHC II (Bio Legend, clone M5/114.15.2), anti-MR (AbD Serotec, clone MR5D3) and anti-PILRa (R&D Systems, polyclonal). Fc receptors were blocked with 1.5mg/ml human IgG (Privigen). Dead cells were excluded using the Hoechst 33342 dye. Only events that appeared single in forward-scatter width were analyzed. The gating strategy is shown in Supplementary Figure 7. A FACSCanto II and FACSDiva software (BD) were used for flow cytometry and data were analyzed with FlowJo software (TreeStar).
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4

Multi-parameter Flow Cytometric Analysis of Immune Cell Populations

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Single-cell suspensions were resuspended in BD stain buffer (BD Bioscience) for 15 min prior to staining with specific antibodies. Antibodies against cell markers: anti-CD45, anti-CD3, anti-CD4, anti-CD8a, anti-CD11b, anti-F4/80, anti-Ly6G, anti-Ly6C, anti-NKp46(CD335), anti-B220, and anti-CD69, were purchased from BD Bioscience and BioLegend; anti-OX40L and anti-41BBL from Miltenyi Biotec (detailed in Supplementary table 4). Samples were mixed with FVS700 (1/7000) and data were acquired on an LSR Fortessa flow cytometer (BD Biosciences) and analyzed with FlowJo software (Tree Star). ROS generation in cultured neutrophils was determined using either DCFDA/H2DCFDA-Cellular ROS Assay Kit (ab113851) following the manufacturer’s protocol or a dihydroethidium (DHE) fluorescent probe. Cells were incubated with DHE (10 μM) in HBSS containing 1.5 mM CaCl2 and 1 mM MgCl2 for 30 min at 37 °C and analyzed by flow cytometry. LacZ activity was determined by flow cytometry using Fluorescein di[β-D-galactopyranoside (Sigma, F2756) as described elsewhere94 (link).
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5

Rat Immune Cell Phenotyping by Flow Cytometry

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The protocol of above mentioned blood sampling was as follows. All antibodies were purchased from BioLegend. Antibodies were directly marked with one of the following fluorescent tags: fluorescein isothiocyanate (FITC), phycoerythrin (PE), or allophycocyanin (APC). anti-CD3(Cat: 552774, BD bioscience), anti-CD(Cat: 550954, BD bioscience), anti-CD8a(Cat: 557654, BD bioscience) antibodies and isotypes were used to react with rat antigens. Cell surface phenotype and sorting were recognized using a flow cytometer (BD company, USA), and the data were analyzed using FlowJo 7.6.1 software.
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6

Isolation and Identification of Murine Hematopoietic Progenitors

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Total bone marrow cells pooled from both femurs of each mouse were labeled with biotin conjugated lineage specific primary antibodies: anti-CD86, anti-CD11c, anti-Ter119, anti CD19, anti-B220, anti-CD11b, anti-CD90, anti-CD8a, anti-Gr1 and anti-CD3e (BD Biosciences, San Diego, CA, USA) followed by incubation with anti-biotin magnetic beads (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany). Magnetic cell separation was carried out using the AutoMACS separator (Miltenyi Biotec) referring to the AutoMACS User Manual applying the separation program ‘depletes’. The enriched lineage negative (linneg) fraction was surface stained with PerCP-Cy5.5-Sca1 (BD Biosciences), APC-CD117 (c-Kit receptor), efluor 450-CD34 and Pe-Cy7-FcγR (eBioscience, San Diego, CA, USA) and taken for FACS analysis to either identify MEPs (linnegSca1negcKit+ CD34negFcγ neg), GMPs (linnegSca1negcKit+ CD34+FcγR+), LSKs (linnegSca1+cKit+), or to sort MPPs (linneg cKit+).
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7

Isolation and Flow Cytometric Analysis of Murine Reproductive Tract Immune Cells

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Spleen, iliac lymph nodes, oviducts, uterine horns, and cervical tissues were isolated from sacrificed mice. Cervical tissue and uterine horns were minced separately and incubated with 1 mL of collagenase I (Sigma) for 20 minutes at 37°C before neutralization with EDTA (10 μM). Single-cell suspensions were prepared by dispersing tissues through a 70-micron tissue strainer (Falcon). Cell suspensions were treated with erythrocyte lysis buffer (VitaLyse®; BioE), incubated in Fc block (5 μg/ml) for 10 minutes, and stained with LIVE/DEAD Fixable Yellow (Life Technologies) plus various combinations of the following fluorochrome-labeled antibodies: anti-CD3 (clone 17A2) anti-CD3e (145-C211), anti-CD4 (GK1.5, RM4-5, H129.19), anti-CD8a (53-6.7), anti-TCRVβ10 (V21.5), anti-TCRβ (H57–597), anti-CD45 (30-F11) anti-CD45.1 (A20), anti-CD45.2 (104), anti-CD44 (IM7), anti-CD62L (MEL-14), and anti-CD69 (H1.2F3), from BD Biosciences. The samples were analyzed on a CyAN ADP (Beckman Coulter) or LSR II flow cytometer (BD Bioscience), and data were analyzed with FlowJo software.
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8

Intracellular Cytokine Staining Protocol for Immune Cells

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ICC was performed as previously described [6 (link)]. In brief, PBMCs, 1×106 cells/well, were seeded into 96-well plates. Brefeldin A, monensin, and anti-CD107a (clone: 1D4B; BD Biosciences, San José, CA) antibody were added to each well and stimulated with media alone, Env, or Gag peptide pools at 2 μg/ml for 5 hours. Afterwards, cells were stained with anti-CD3e (clone: 500A2; BD Biosciences, San José, CA), anti-CD4 (clone: GK1.5; BD Biosciences, San José, CA), and anti-CD8a (clone: 53-6.7; BD Biosciences, San José, CA), incubated, and fixed with BD Perm/Fix (BD Biosciences, San José, CA). Cells were washed and resupended for cytokine analysis on an LSR-Fortessa (BD Biosciences, San José, CA).
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9

Isolation and Characterization of Mouse Pancreatic Immune Cells

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Mouse pancreatic tissues were digested by digestion buffer (1 mg/ml collagenase IV [Sigma-Aldrich] and 10 U/ml DNase I [Sigma-Aldrich] in DMEM) at 37 °C for 30 min. The digested tissues were pushed through a 70-µm cell strainer and washed by 40 ml of DMEM without FBS. The digested cells were resuspended in 37% Percoll, with the same volume of 70% Percoll on the bottom of the tube. After centrifugation at 800 g for 20 min with break off, the immune cells were isolated from the 37%/70% interface and rinsed by PBS. The cells were first stained by Zombie UV (BioLegend, #423107, 1:500), then were incubated with a cocktail comprising the following antibodies in cell staining buffer (#420201, BioLegend): anti-CD45 (#103131, 1:150), anti-CD3ε (#100355, 1:60), anti-B220 (#103231, 1:200), anti-Gr1 (#108438, 1:150), anti-CD11b (#101215, 1:250), anti-F4/80 (#123131, 1:400), anti-Ly6C (#128033, 1:40), anti-Ly6G (#127651, 1:80), anti-CD4 (#100405, 1:200), anti-IA/IE (#107607, 1:500, all from BioLegend), and anti-CD8a (#564297, 1:200, BD Biosciences). After washing, the stained cells were submitted for multiple-color flow cytometry analysis. The data were collected on LSR Fortessa X-20 analyzer with FACSDiva software version 8.0 (BD) and analyzed using FlowJo version 10 (BD).
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10

Immunohistochemical Analysis of Vascular and Immune Markers

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Immunohistochemistry was carried out on 5 µm‐thick cryosections using following antibodies: anti‐collagen I (Chemicon, Limburg/Lahn, Germany), anti‐collagen III (Merck Millipore, Darmstadt, Germany), anti‐CD68 (Abcam, Cambridge, U.K.), anti‐CD3 (Santa Cruz Biotechnology, Heidelberg, Germany) anti‐CD4 (BD Biosciences, San Jose, CA), and anti‐CD8a (BD Biosciences). Analysis of stained sections was made in a blinded fashion by digital image analysis on a Leica DMRB microscope (Leica Microsystems, Wetzlar, Germay) at ×200 magnification. Artery and arteriole density was measured using immunohistochemistry with an anti‐α‐smooth muscle actin (SMA) antibody (1:200, Abcam). Microscopy was performed on a Leica DM2000 light microscope. Arteries and arterioles were counted in 10 high power fields (hpf) per animal at a magnification of ×100. The density is presented as number of arteries or arterioles per hpf.
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