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4 protocols using g3231

1

Identifying Schwann Cells in Synapse Cultures

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Polyclonal antibodies against the extracellular (Millipore Cat# AB1554 RRID:AB_90760) and cytoplasmic (Promega Cat# G3231 RRID:AB_430853) domains of the low-affinity neurotrophin receptor p75NTR (both at 1:400 dilution) were used to identify Schwann cells in vitro (Provenzano et al., 2011 (link); Whitlon et al., 2009 (link)), determine their specific location within synapse cultures, and their alignment to neighboring spiral ganglion neurons. Western blot and immunocytochemical analysis of antibody specificity showed the expected lack of protein in p75NTR−/− animals compared to wild type controls (Gehler et al., 2004 (link); Shulga et al., 2012 (link); Wagner et al., 2011 (link)).
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2

Immunochemical Verification of OECs

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Immunochemistry was used to verify the identity of the DsRed-positive OECs. For in vivo verification, heads from postnatal day 7 S100ß-DsRed mice were fixed in 4% paraformaldehyde (PFA) at 4°C for 24 h, cryoprotected in 30% sucrose, frozen and sectioned on a cryostat microtome in 30 µm thick sections. For in vitro immunocytochemistry, OECs were fixed in 4% PFA for 10 min. Cryostat sections or cultured OECs were incubated for 30 min at room temp in 0.1 M phosphate buffered saline (PBS) with 2% bovine serum albumin (BSA) and 0.3% Triton X-100 (TX). Rabbit polyclonal anti-p75 ntr (1∶500, Promega, G3231, raised against the cytoplasmic domain of recombinant human p75, AB_430853 [34] (link)) or rabbit polyclonal anti-S100ß (1∶500, Dako, Z031129-2, raised against full length S100 isolated from cow brain, AB_2315306 [35] (link)) antibodies (Table S1) were diluted in 0.1 M PBS/2% BSA/0.3% TX. Cells and tissue sections were incubated with the antibodies overnight at 4°C, washed and incubated with goat anti-rabbit secondary antibodies conjugated to Alexafluor 488 (1 µg/mL, Invitrogen, AB_10049650) or Alexafluor 594 (1∶200, Invitrogen, AB_10049744) in PBS/BSA/TX at room temp for 1 h and then stained with DAPI to visualise nuclei.
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3

Immunoblotting and Immunofluorescence Antibodies

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The following antibodies were used in immunoblotting and immunofluorescence experiments: rabbit anti-human p75NTR (1:1,000; G3231; Promega), rabbit anti-TrkA (1:1,000; Millipore), rabbit anti-phosphoTyr674/5 (1:1,000; Cell Signaling), mouse anti-HA (1:2,000; Sigma-Aldrich), mouse anti-FLAG M2 (1:1,000; Sigma-Aldrich), mouse anti β-actin (1:1,000; Sigma-Aldrich), rabbit MBP-probe (1:1,000; Santa Cruz), rabbit anti-Cleaved Caspase-3 (1:1,000, 9661S; Cell Signaling), rabbit anti phospho-p38 (1:1,000, 9211; Cell Signaling), rabbit anti p38 (1:1,000, 9212; Cell Signaling), rabbit anti JNK (1:1,000, 9252; Cell Signaling), rabbit anti phospho-JNK (1:1,000, 9251; Cell Signaling), goat anti-choline acetyltransferase (1:200, AB144P; Millipore), rabbit anti Cy3 (1:500; Jackson), goat anti mouse Ig/HRP (1:10,000; Jackson), goat anti rabbit Ig/HRP (1:10,000; Jackson), goat IRDye800 (1:15,000; Rockland), and goat anti-mouse antibodies coupled to either Alexa 555 or Alexa 488 (Invitrogen). The DNA was stained with DAPI (1:1,000).
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4

Sciatic Nerve Immunohistochemistry in SOD1 Mice

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P73 (n = 4) WT and SOD1G93A mice were culled, and sciatic nerves were immediately dissected, post-fixed in a 4% PFA solution in PBS overnight at 4 °C, cryopreserved in a 30% sucrose solution in PBS for 2 d at 4 °C, and finally frozen in OCT (Agar Scientific, AGR1180). 30 µm longitudinal cryosections of sciatic nerves were directly mounted on SuperFrost Plus slides (VWR, 631–0108), and a hydrophobic barrier pen (Vector Laboratories, H-4001) was then applied to the slides surrounding the sectioned tissue. PBS rehydrated tissue was then blocked using 10% normal horse serum in 0.2% Triton X-100 in PBS for ~ 1 h and then primary antibodies (see Additional file 2: Table S3) specific for S100 (Merck, S2532, 1:200), TUJ1 (Synaptic systems, 302306, 1:500), TrkB (Millipore, 07–225, 1:250) and p75NTR (Promega, G3231, 1:500) were applied overnight at room temperature. After multiple PBS washes, the secondary antibodies (see Additional file 2: Table S4) in PBS were applied for 2–3 h, followed by multiple washes and then mounted with Mowiol. Slides were dried and imaged as described above. A minimum of six sciatic nerve sections were imaged per condition. Mean fluorescence was measured by applying a TUJ1 and S100 mask to the TrkB or p75NTR regions, and the mean fluorescence per animal was assessed by averaging all the individual data points.
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