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25 protocols using anti pstat3 y705

1

Western Blotting Analysis of Apoptosis Markers

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Cell lysates were prepared by resuspending cell pellets in 1× Laemmli sample buffer containing 5% β-mercaptoethanol. Protein from lung tissues were extracted using IPH lysis buffer (50 mM Tris (pH 8.0), 150 mM NaCl, 5 mM EDTA, 0.5% NP40) containing protease inhibitor cocktail (Roche). The protein lysates were separated by SDS–PAGE and then electrotransferred to nitrocellulose membranes (Millipore Corp., Bradford, MA, USA). Detection of specific proteins was carried out with enhanced chemiluminescence reagents following the manufacturer’s instructions (P90720, Millipore Corporation, MA, USA). The primary antibodies used for western blotting were as follows: anti-Caspase-9 (#9508), anti-Caspase-8 (#9746), anti-Caspase-7 (#8438), anti-Caspase-3 (#9664), anti-Bim (#2933), anti-Bak (#3814), anti-Bcl-xL (#2762), anti-p-Jak2 (#3771), anti-Jak2 (#3230), and anti-p-STAT3Y705 (#9145), which were purchased from Cell Signaling Technology. Anti-CDK2 (sc-6248), anti-p53 (sc-126), anti-STAT3 (sc-8019), anti-PARP-1 (sc-74470), anti-Cyclin D1 (sc-8396), and anti-β-actin (sc-47778) antibodies were purchased from Santa Cruz Biotechnology. An anti-p21 (ab7960), anti-p16 (ab108349), anti-IL-6 (ab6672), and anti-TNF-α (ab6671) antibodies were purchased from Abcam. Densitometry analyses were performed using ImageJ software (National Institutes of Health, NIH).
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2

Western Blot Analysis of STAT3

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Cecum samples were homogenized with a handheld homogenizer in 300µL of RIPA buffer (Thermo Fisher) supplemented with complete protease inhibitors and phosstop phosphatase inhibitors (Roche). 5 µg of protein was subject to PAGE and blotted with anti-GAPDH (Cell Signaling 2118), anti-STAT3 (Cell Signaling 4904), or anti-pSTAT3 (Y705) (Cell Signaling 9145).
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3

Protein Extraction and Analysis Protocol

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Total cell lysates were obtained with NP-40 lysis buffer (150 mM sodium chloride, 1.0% NP-40, 50 mM Tris, pH 8.0), supplemented with protease inhibitor cocktail (cOmplete mini, Roche) and phosphatase inhibitors (PhosSTOP, Roche). Protein samples were denatured with 2-mercaptoethanol at 95 °C for 5 min. The following antibodies were used for detection: anti-pALK Y1604 (Cell Signaling Technology), anti-ALK (Cell Signaling Technology), anti-pSTAT3Y705 (Cell Signaling Technology), anti-STAT3 (Cell Signaling Technology), anti-pERK1/2 (Cell Signaling Technology), anti-ERK1/2 (Cell Signaling Technology), anti-pAkt Y473 (Cell Signaling Technology), anti-AKT, anti-human PARP (Santa Cruz Biotechnology), anti-HDAC8 (H-145;polyclonal; Santa Cruz, Santa Cruz, CA, USA), anti-p-mTOR (Ser2448; Upstate), anti-p-S6K1 (Thr412; Upstate), anti-MET (Cell Signaling Technology), anti-MYCN (Santa Cruz), anti-ac-SMC3 (provided by Prof. K Shirahige, University of Tokyo, Tokyo, Japan) [55 (link)], anti-HSC70 (Santa Cruz), anti-β-actin (clone AC-15; Sigma), anti-actinin (H-2; Santa Cruz) and anti-GAPDH (clone 6C5; Merck).
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4

Delineating IL-6 Signaling Pathways

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Primary antibodies used included rabbit anti-Ras (#3965, Cell Signaling Technologies, 1:1000), anti-pSTAT3 Y705 (#9145 S, Cell Signaling Technologies, dilution 1:1000), anti-pSTAT3 S727 (#9134D, Cell Signaling Technologies, dilution 1:1000), anti-STAT3 (#4904 S, Cell Signaling Technologies, dilution 1:1000), mouse anti-SV40-T antigens (MABF121, EMD Millipore, dilution 1:1000), and mouse anti-β-actin (A5441, Sigma-Aldrich, 1:5000). For IL-6 signaling neutralization studies, anti-IL-6R antibody (MAB227, R&D Systems) or control IgG (sc-2025, Santa Cruz Biotechnology) at 2 µg/ml concentration was added to CM for 1 h prior to adding CM to epithelial cells. Cells were treated with CM for 2 h prior to harvesting cells for western blotting. Anti-mouse (#7076, dilution 1:10000), and anti-rabbit (#7074, dilution 1:10000) horseradish peroxidase (HRP) linked secondary antibodies were purchased from Cell Signaling Technologies. Cell lysates were prepared in radioimmunoassay buffer and analyzed by western blotting43 (link). Uncropped blots are presented in the Source data file.
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5

Immunoblotting and Immunoprecipitation Protocol

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Immunoblotting and immunoprecipitation were performed as previously described52 (link). Anti-MSK1, anti-Aurora B, anti-β-actin, anti-NFATc2, anti-GADPH, anti-α-tubulin, anti-laminA/C were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Anti-p-H3S10 and anti-H3 were from Active Motif (Carlsbad, CA, USA). Anti-STAT3, anti-AKT, anti-p42/44, anti-p-STAT3 Y705, anti-p-STAT3 S727, anti-p-AKT S483, anti-p-p42/44 were from Cell Signaling Technology (Danvers, MA, USA).
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6

Western Blot Analysis of Protein Expression

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Western blot analyses were performed as described previously6 (link), using the following primary antibodies: anti-PLOD3 (Proteintech Group, Inc., Chicago, IL, USA); anti-HA, anti-ERK1/2, anti-p38, anti-K-RAS, anti-H-RAS (Santa Cruz Biotechnology Inc.); anti-p-anti-ERK1/2, anti-p-p38, anti-p-JNK, anti-JNK, anti-STAT3, anti-p-STAT3 (Y705), and anti-p-STAT3 (S727) (Cell Signaling Technology Inc.) antibodies. β-actin (Sigma) was used as a loading control.
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7

Western Blot Protein Analysis

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For Western blots, whole-cell extracts were prepared using the radioimmunoprecipitation assay (RIPA) lysis buffer (LPS solution, Daejeon, Korea) comprised of 150 mM NaCl, 1% NP-40, 0.1% SDS, and 50 mM Tris (pH 7.4) containing 1 mM NaF, 1 mM Na3VO4, 1 mM ß-glycerophosphate, 2.5 mM sodium pyrophosphate, and protease inhibitor cocktail (Roche, Basel, Switzerland). Proteins were quantified using the Bradford assay reagent (Bio-Rad) according to the manufacturer’s instructions. Proteins (20–30 μg) were separated on 8–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting was performed as described above. The primary antibodies used were as follows: Anti-pSTAT3 (Y705) (1:500, 9145S; Cell Signaling Technology, Danvers, MA, USA), anti-STAT3 (1:1000, 4904S; Cell Signaling Technology), anti-fibronectin (1:500, ab6328; Abcam, Cambridge, UK), anti-integrin α5 (1:1000, ab150361; Abcam), anti-JAK1 (1:500, 50996S; Cell Signaling Technology), anti-JAK2 (1:1000, 3230S; Cell Signaling Technology), anti-GP130 (1:2000, ab226346; Abcam), anti-LDB1 (1:1000, ab96799; Abcam), anti-LMO2 (1:500, NB110-78626SS; Novus Biologicals, Littleton, CO, USA), and anti-α-tubulin (1:10,000, T6199; Sigma Aldrich). α-Tubulin was used as a loading control.
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8

Investigating Signaling Pathways in Cells

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Anti-PAK1, anti-pStat3 (Y705), and anti-JAK2 antibodies were obtained from Cell Signaling (Danvers, MA, USA). Anti-p65, anti-Stat3, anti-β-actin, and anti-Lamin b were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-CD44-FITC and anti-CD24-PE antibodies were purchased from BD Pharmingen (Franklin Lakes, NJ, USA). Antibodies for ChIP and EMSA experiments were Anti-PAK1 and anti-pStat3. Human PAK1 siRNA and scrambled siRNA were purchased from Bioneer (Daejeon, Korea). The pPAK1 and pStat3 plasmids were purchased from Addgene (Watertown, MA, USA).
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9

Western Blotting and Flow Cytometry Protein Detection

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The following primary antibodies were used for detecting proteins by Western blotting analysis or by intracellular staining and flow cytometry: anti-STAT1, anti-STAT3, anti-pSTAT1 (Y701), anti-pSTAT3 (Y705), anti-SOCS1, anti-SOCS3, anti-SOCS5, anti-JAK1, anti-JAK2, anti-JAK3, anti-MeCP2 (all from Cell Signaling Technology), and anti-β-actin (Sigma). The primary anti-SOCS5 antibody used to analyze LLO118 TCR transgenic T cells was purchased from Santa Cruz Biotechnology. Alexa Fluor 680–conjugated anti-rabbit antibody and Alexa Fluor 800–conjugated anti-goat antibody (Invitrogen) were used as secondary antibodies, and fluorescence intensity was measured on an Odyssey system (Licor).
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10

Western Blot Analysis of Signaling Proteins

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Whole-cell extracts from DCs or CAFs were prepared in RIPA buffer (Cell Signaling, Boston, MA, USA) plus Complete Protease and Phosphatase Inhibitor Cocktail (ThermoFisher, cat.no. 78440). Total cell-associated proteins were separated on 10% SDS-polyacrylamide gel electrophoresis (PAGE) and transferred onto a PVDF membrane. The membrane was blocked with 1% BSA in tris buffered saline, 0.1% Tween 20 (TBS-T) for 2h at room temperature, and then incubated (overnight, 4°C) with primary antibodies (anti-GAPGH, cat. no. 5174; anti-STAT3, cat. no. 4904; anti-p-STAT3 (S727), cat.no. 34911; anti-p-STAT3 (Y705), cat-no. 9145; anti-NF-κB/p65, cat.no. 8242; anti-p-NF-κB/p65, cat.no 3033; Cell Signaling; anti-TDO2, cat.no. ab76859) diluted 1:1000 (in TBS-T with 1% BSA). Subsequently, the membrane was washed 5x in TBS-T and then incubated with an anti-rabbit or anti-mouse HRP-conjugated secondary antibody (diluted 1:2000; Cell Signaling) for 1h at room temperature. Finally, proteins transferred to the membrane were visualized with Enhanced Chemiluminescence at ImageQuant LAS 4000 CCD (GE Healthcare Bio-Sciences, PA, USA). Relative intensity was assessed using ImageJ software.
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