Mouse mammary tumour tissue was embedded and preserved in optimal cutting temperature (OCT) compound at −80 °C. Before cutting, samples were brought to −20 °C for at least 2 h and a 20-μm-thick section was cut using a cryostat. Slides were thawed and incubated at 37 °C for 30 min and then transferred to boiling antigen unmasking solution (Vector labs,
H-3300) for 10 min. After nuclear staining with
To-pro-3 (Fisher, T3605), each tumour section was mounted with
fluoromount-G medium (Electron Microscopy Science, 17984–25) onto a microscope coverslip (no. 1.5). All samples were imaged using a Leica
TCS SP8 multiphoton confocal microscope and a 20×, HC PL Apo, NA 0.7 oil-immersion objective was used throughout the experiments. The excitation wavelength was tuned to 840 nm
34 (link), and a 420 ± 5 nm narrow bandpass emission controlled by a slit was used for detecting the SHG signal of collagen. SHG signal is generated when two photons of incident light interact with the noncentrosymmetric structure of collagen fibres, which leads to the resulting photons being half the wavelength of the incident photons. Collagen measurement was performed using CT-Fire software (v.2.0 beta) (
https://loci.wisc.edu/software/ctfire). Tumour margin for SHG analysis is defined as an area on the tumour side with a depth of 60 μm from the tumour–stroma border.
Sun X., Wu B., Chiang H.C., Deng H., Zhang X., Xiong W., Liu J., Rozeboom A.M., Harris B.T., Blommaert E., Gomez A., Garcia R.E., Zhou Y., Mitra P., Prevost M., Zhang D., Banik D., Isaacs C., Berry D., Lai C., Chaldekas K., Latham P.S., Brantner C.A., Popratiloff A., Jin V.X., Zhang N., Hu Y., Pujana M.A., Curiel T.J., An Z, & Li R. (2021). Tumour DDR1 promotes collagen fibre alignment to instigate immune exclusion. Nature, 599(7886), 673-678.