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66 protocols using robosep

1

Quantification of Tacrolimus Levels

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Blood samples were drawn pre-dose and 1.5, 48, 96, and 192 h after drug administration. The samples for whole blood PK measurement were collected in K2EDTA tubes (Becton Dickinson, Franklin Lakes, NJ, US) and stored at −80 °C. PBMCs were collected using sodium heparin CPT tubes (Becton Dickinson), and T cells were isolated from heparinized whole blood by immunomagnetic cell sorting. The RoboSep human T cell isolation kit was used in combination with RoboSep (StemCell Technologies) to label unwanted cells with antibody complexes and magnetic particles, after which T cells were isolated by automated magnetic sorting. After PBMC and T cell isolation, the cells were washed, and the remaining red blood cells were removed using RBC lysis buffer (Thermo Fisher Scientific, Waltham, MA, US). PBMCs and T cells were counted with a MacsQuant 10 analyzer (Miltenyi Biotec, Bergisch Gladbach, Germany) and stored in PBS at 20 × 106 cells/mL at −80 °C. The purity of the isolated T cell population was assessed with an anti-CD45-FITC and anti-CD3-VioGreen staining (Miltenyi Biotec).
Whole blood and intracellular tacrolimus concentrations were measured using a Waters Acquity UPLC–MS/MS system by the Department of Hospital Pharmacy, Erasmus Medical Center, as described previously [19 (link)].
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2

Isolation and Transfer of NK Cells

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Transferred NK1.1+CD11c+ cells were sorted by FACSAria (BD Bioscience) or RoboSep (Stemcell Technology). Transferred NK1.1+ cells were purified by a combination of CD4-negative / NK1.1 and CD11c-positive bead selection (RoboSep, Stemcell Technologies) from cell suspension depleted of CD4 cells by CD4-positive-selection kit (Stemcell Technologies). 3-5×106 cells were injected i.v. per mouse. Recipients were untouched WT mice.
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3

Isolation of Primary CD138+ Cells

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Primary CD138+ cells were isolated from bone marrow mononuclear cells obtained from HLA-A2+ and HLA-A2 MM patients using RoboSep® CD138 positive immunomagnetic selection technology (StemCell Technologies), after appropriate informed consent.
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4

Isolation and Analysis of T Cell Subsets

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Single-cell lymphocyte solutions were prepared from organs as indicated and resuspended in staining buffer containing 5% FBS in HBBS. Pre-enrichment of splenic lymphocytes was performed using PE-labeled CD8+ T cell magnetic bead positive selection according to the manufacturer instructions (RoboSep, STEMCELL Technologies). Splenic and brain-resident lymphocytes were identified using mAbs against the following Ags, all from BioLegend unless otherwise noted: PE-CD8α (MAR1), FITC-CD4 (RM4–5), BV711-CD11b (M1/70), BV421-CD45.2 (1D4), allophycocyanin/Cy7-CD45.2 (1D4), and allophycocyanin-TCRβ, (H57–597; eBio science). Samples were sorted on an FACSAria III SORP (BD Biosciences) equipped with violet (403 nm, 100 mW), blue (488 nm, 100 mW), yellow-green (561 nm, 50 mW), and red (638 nm, 150 mW) lasers, then analyzed with FlowJo (Tree Star). Pre- and postsort purity of CD8+ T cells are shown in Fig. 1A.
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5

Quantifying HIV DNA in Monocytes

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Frozen PBMC were thawed in warm media (RPMI 1640 supplemented with 20 % fetal bovine serum), washed once, and resus-pended in RoboSep buffer (StemCell Technologies). Samples were placed in a RoboSep automated cell separator (StemCell Technologies), and CD14+ cells were purified through magnetic separation using the EasySep human monocyte enrichment kit without CD16 depletion (StemCell Technologies). DNA was extracted from CD14+ monocytes or total PBMC using the QIAamp DNA Micro Extraction kit (Qiagen) and quantified using the ND-2000 spectrophotometer (NanoDrop Technologies) as previously described [19]. Determination of HIV DNA content was assessed using multiplex real-time PCR with HIV gag and β-globin primer pairs to amplify respective regions that were detected with FAM-labeled HIV gag and VIC-labeled β-globin probes. Using standard reference plasmids with one copy of the β-globin housekeeping gene and one copy of the HIV gag gene and appropriate positive/negative controls, samples were run in triplicate on StepOnePlus Real-Time PCR System and analyzed using the StepOne software (Applied Biosystems). The copy numbers of each sample gene were analyzed against the standard curves and used to calculate HIV DNA copy number per 1×106 cells.
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6

Transplantation of Primary AML and HSPCs in NSG Mice

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Sex- and age- (8–10 weeks) matched NSG mice were conditioned with a sublethal dose of irradiation (200 rad) 12–24 h before transplantation (Faxitron, X-ray irradiation). Irradiation-conditioned NSG mice were transplanted with either primary AML blasts (106) or normal CD34+ HSPCs (105) in 100 μl PBS via tail vein injection. For AML, freshly thawed primary AML samples were subjected to T cell depletion using anti-CD3 magnetic beads (Robosep, Stem Cell Technologies).
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7

Plasma Cell Isolation and DNA Extraction

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Patient material was obtained after written informed consent in accordance with the U.S. Common Rule and were approved by the Institutional Review Board. CD138+ plasma cells were magnetically-sorted from bone marrow aspirates using the AutoMACS Pro (Miltenyi Biotec GmbH, Bergisch Gladbach, Germany) or RoboSep (STEMCELL Technologies, Vancouver, Canada). The post-selection plasma cell purity was determined by flow cytometry using anti-CD45-ECD (Beckman Coulter), anti-CD138 (Becton Dickinson) and only samples with >85% purity were used in this study. DNA was isolated from CD138+ plasma cells using the AllPrep DNA/RNA or Puregene kits (Qiagen, Hilden, Germany). DNA from peripheral blood, saliva, or CD34+ stem cells was isolated and used as a matched non-tumor control where available. For 39 samples, the CD138- fraction was used as the control sample. All DNA were eluted in low EDTA buffer.
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8

Isolation of CD138+ Plasma Cells from MM Patients

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A total of 89 bone marrow samples were obtained from patients with MM diagnosed with MM between 2007 and 2009, according to the IMWG criteria, at the Department of Hematology, Rigshospitalet, Denmark. From these samples, 48 were obtained at diagnosis and 41 at relapse. For all the samples, the CD138+ plasma cells were isolated from the mononuclear cell population from each bone marrow sample with the use of a RoboSep (Stem Cell Technologies, Vancouver, BC, Canada). All included patients provided written consent in accordance with the Helsinki Declaration. The Danish National Ethical Committee approved the conduction of this study.
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9

Isolation and Purification of Plasma Cells

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Patient material was obtained after written informed consent in accordance with the U.S. Common Rule and were approved by the Institutional Review Board. CD138+ plasma cells were magnetically sorted from bone marrow aspirates using the AutoMACS Pro (Miltenyi Biotec GmbH) or RoboSep (STEMCELL Technologies). The postselection plasma cell purity was determined by flow cytometry using anti-CD45-ECD (Beckman Coulter), anti-CD138 (Becton Dickinson), and only samples with more than 85% purity were used in this study. DNA was isolated from CD138+ plasma cells using the AllPrep DNA/RNA or Puregene kits (Qiagen). DNA from peripheral blood, saliva, or CD34+ stem cells was isolated and used as a matched nontumor control where available. For 39 samples, the CD138 fraction was used as the control sample. All DNA were eluted in low EDTA buffer.
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10

Whole Exome Sequencing of Hyperhaploid Samples

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Samples previously identified as hyperhaploid by karyotyping were selected for whole exome sequencing. An additional hyperhaploid sample was identified through routine targeted sequencing. Samples had undergone CD138+ cell selection by either AutoMACS (Miltenyi) or RoboSep (Stem Cell Technologies) and DNA was extracted. Patient matched control DNA was also isolated from peripheral blood stem cell harvest samples.
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