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95 protocols using anti vegf

1

Antiangiogenic Effects of Vandetanib

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Conditional medium was made of supernatant of breast cancer cells medium, DMEM, and FBS at a ratio of 4:5:1, respectively. HUVECs purchased by ATCC were cultured in DMEM with 10% FBS, 2 mM Gln, 100 IU/mL penicillin, 100 µg/mL streptomycin, and 1% non-essential amino acids (Gibco). To further address VEGF on vandetanib-induced antiangiogenesis effect, we used NC group (100 µL DMSO), ZD6474 group (100 µL ZD6474 [50 µg/mL]), VEGF group (100 µL DMSO and 100 µL VEGF [Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA] [10 ng/mL]), ZD6474+ VEGF group (100 µL ZD6474 [50 µg/mL] and100 µL VEGF [10 ng/mL]), DMSO + anti-VEGF group (100 µL DMSO and 100 µL anti-VEGF [Santa Cruz] [10 ng/mL]), anti-VEGF + ZD6474 group (100 µL ZD6474 [50 µg/mL] and 100 µL anti-VEGF [10 ng/mL]) and control group.
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2

Western Blot Analysis of Protein Expression

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Cells pellets were lysed in RIPA buffer (Sigma-Aldrich). Supernatant containing 20 µg of proteins was resolved in SDS-polyacrylamide gel and electroblotted onto PVDF membranes (Millipore, Billerica, MA) using a semidry transfer unit (ATTO, Tokyo, Japan). Immunoblotting was performed with anti-VEGF, MMP-2, Vimentin (Santa Cruz), N-Cadherin, uPA & hnRNP-K (Abcam), phospho-p38MAPK, E-Cadherin (Cell Signaling), HSP27 (StressMarq Biosciences Inc.) and β-actin (Abcam, Cambridge) antibodies. The membranes probed with the first antibodies were excessively washed with TBS-T (Tris-buffered saline-Tween 20) and incubated with secondary horseradish peroxidase (HRP)-conjugated goat anti-mouse or anti-rabbit (Santa Cruz) antibodies. Protein bands were detected using ECL prime substrate (GE Healthcare, CA). Densitometric quantitation of three independent immunoblotting experiments was performed with the Image J software (NIH, Bethesda, MD). Expression level of each of the proteins in control and treated cells was calculated with respect to the β-actin (loading control). All experiments were performed in triplicate.
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3

Western Blot Analysis of Gastric Cancer

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Frozen gastric cancer tissues or cells were prepared with lysis buffer. The lysates were harvested by centrifugation (12,000 rpm) at 4°C for 30 min. The protein concentration was determined by Bradford method (Bio-Rad, Hercules, CA). Equal amounts of protein (50 μg/lane) were separated by electrophoresis in sodium dodecyl sulfate polyacrylamide gel (SDS-PAGE), and transferred onto a nitrocellulose membrane (Amersham Biosciences). After blocking with 5% non-fat milk in TBST (50 mmol/L Tris–HCl [pH 7.6], 150 mmol/L NaCl, 0.1% Tween 20) at room temperature for 1 h, the membranes were incubated overnight at 4°C with primary antibody (anti-Lgr5, 1:100, Abcam, Cambridge, Massachusetts, USA; anti-VEGF, 1:400, Santa Cruz Biotechnology, USA; β-actin, 1:1000, Santa Cruz Biotechnology, USA). After washing three times with TBST, the membranes were incubated with horseradish peroxidase-coupled goat anti-rabbit secondary antibody (1:2000, Santa Cruz Biotechnology, USA) for 2 h at room temperature. Antibodies against β-actin and GAPDH were used as internal controls. Enhanced chemoluminescence was used for detection. The protein quantity was analyzed with Quantity-One v4.4 software (Bio-Rad, Hercules, CA, USA). The target protein expression was evaluated by the relative intensity ratio of target protein/loading control.
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4

Adhesion of hPDLSCs on Granules

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To better understand and evaluate the adhesion on G, the hPDLSCs on granules were processed for immunofluorescence labeling. Samples were fixed for 10 min at room temperature (RT) with 4% paraformaldehyde in 0.1M sodium phosphate buffer (PBS), pH 7.4. Then, samples were permeabilized with 0.5% Triton X-100 in PBS, followed by blocking with 5% skimmed milk in PBS. Primary monoclonal antibodies to antivinculin (1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and anti-VEGF (1:250; Santa Cruz Biotechnology) were used, followed by Alexa Fluor 568 green fluorescence conjugated goat antimouse as secondary antibodies (Molecular Probes, Invitrogen, Eugene, OR, USA). Subsequently, samples were incubated with Alexa Fluor 488 phalloidin green-fluorescence conjugate (Molecular Probe) as cytoskeleton actin marker. Samples were placed face-down on glass slides and mounted with Prolong antifade (Molecular Probes) [49 (link)]. Samples were observed with CLSM (Zeiss LSM510META) and connected to an inverted Zeiss Axiovert 200 microscope equipped with a Plan Neofluar oil-immersion objective (40×/1.3 NA).
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5

Angiogenic Protein Expression Analysis

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The infarct border zone tissue was homogenized in RIPA buffer with proteinase inhibitor for 1 h at 4 °C. Proteins were collected by centrifugation, and the supernatant boiled with 4× Laemmli sample buffer at 96 °C for 10 min. The denatured proteins were separated on a 10% SDS-PAGE gel and transferred to a membrane. The membrane was incubated with anti-VEGF (Santa Cruz, 1:1000), anti-angiogenin (Abcam, 1:1000), anti-angiopoetin 2 (Abcam, 1:1000), and b-actin (Abcam, 1: 4000) antibodies overnight at 4 °C. After washing, anti-rabbit HRP secondary antibody was added and target proteins were visualized using Clarity ECL Western Blotting Substrate (Bio-Rad, Hercules, CA, USA). Quantification of protein bands was performed using ImageJ software.
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6

Cytosolic and Nuclear Protein Analysis

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Total cytosolic and nuclear extracts were prepared, as previously described [26 (link)], on saphene veins. The following primary antibodies were used: anti- IL-1β (Santa Cruz Biotechnology, Dallas, TX, USA, 1:500 #sc12742, D.B.A, Milan, Italy), anti-TNF-α (Santa Cruz Biotechnology; 1:500 #sc52746), anti-TGFβ1 (Santa Cruz Biotechnology, 1:500 #sc130348, D.B.A, Milan, Italy), anti-VEGF (Santa Cruz Biotechnology; 1:1000 #sc7269), anti- αSMA (Santa Cruz Biotechnology; 1:500 #sc53015) and anti-prolyl endopeptidase (Abcam; 1:1000,#ab58988) in 1× phosphate-buffer saline (Biogenerica srl, Catania, Italy), 5% w/v non-fat dried milk, 0.1% Tween-20 at 4 °C overnight. Membranes were incubated with peroxidase-conjugated bovine anti-mouse IgG secondary antibody (Jackson ImmunoResearch, West Grove, PA, USA; 1:2000) for 1 h at room temperature. Anti-β-actin (Santa Cruz Biotechnology; 1:1000 #sc47778) and anti-βTubulin (Santa Cruz Biotechnology; 1:1000 #sc5274) antibodies were used as controls. Protein expression was detected by chemiluminescence (ECL) system (Thermo, Waltham, MA, USA), visualized with the ChemiDoc XRS (Bio-Rad, USA), and analyzed by using Image Lab 3.0 software (Bio-Rad, Hercules, CA, USA) as previously reported [27 (link)].
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7

Western Blot Analysis of mTOR Pathway

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Cells were lysed in 200 μl RIPA buffer (150 mM sodium chloride, 1% NP 40, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulphate, 50 mM Tris-HCl [pH 8.0], 100 mM PMSF) and centrifuged at 14,000 g for 10 min at 4°C. The supernatant was mixed with denaturing sample buffer (1:1) and boiled for 5 min at 94°C. Equal amounts of protein (50 μg) were loaded and separated by 10% SDS-polyacrylamide gel electrophoresis and blotted onto nitrocellulose membranes (BioRad, Hercules, CA, USA). The membranes were blocked in Tris-buffered saline with Tween 20 (TBST) containing 5% non-fat dry milk for 1 h at 4°C and incubated with anti-4E-BP1 (1:2000), anti-phospho-4E-BP1 (1:1000), anti-mTOR (1:2000), anti-E-cadherin (1:1000) (all from Cell Signalling Technologies, Danvers, MA, USA), or anti-VEGF (1:2000; Santa Cruz Biotechnology, Santa Cruz, CA, USA) antibodies overnight at 4°C. Anti-β-actin antibody (1:5000; Sigma-Aldrich) was used as a control. Membranes were washed in TBST and incubated with horseradish peroxidase-conjugated secondary antibodies (Jackson Immunoresearch, West Grove, PA, USA) for 1 h at room temperature and washed again in TBST. The signal was detected using an enhanced chemiluminescence kit (Thermo Scientific, Rockford, IL, USA), and intensity was quantified using ImageJ software.
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8

Angiogenesis Evaluation in Flap Tissue

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Seven days after flap elevation, segments of tissue (0.5×1.0 cm) were obtained from an area 3 cm away from the base of the flap along the long axis. The skin tissue was embedded in paraffin and 5 µm sections were obtained. Both hematoxylin and eosin staining and immunohistochemical staining for CD31 (anti-CD31 antibody, #1506, Santa Cruz, CA, USA) were performed. Capillaries were observed as a single layer of flattened endothelial cells without smooth muscle, as observed at 200X on an optical microscope (Olympus, Tokyo, Japan). To eliminate bias, capillaries were counted in eight areas (0.46 mm2) by an independent researcher blinded to the treatment group, and the capillary density was recorded as capillary count/mm2.
Both hematoxylin and eosin staining and immunohistochemical staining for VEGF (anti-VEGF, #7269, Santa Cruz, CA, USA), SDF-1 (anti-SDF1, #3740S, CST, Danvers, MA, USA) and HIF-1α (anti-HIF-1α, #53546, Santa Cruz, CA, USA) were performed on flap tissue. Expression levels of VEGF, SDF-1 and HIF-1α were analyzed by immunohistochemistry using imaging analysis software (Metamorph®, Universal Imaging Corporation, Downingtown, PA, USA).
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9

Measuring Signaling Pathways in Lung Tissue

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The protein extracts of lung were incubated with the primary antibody [anti-phosphoinositide 3-kinases (PI3K) (1:1000; Cell Signaling Technology); anti-nuclear factor kappa B (NFκB, p65) (1:200; Santa Cruz Biotechnology, Santa Cruz, CA, U.S.A.); anti-nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor alpha (IκBα) (1:10000; Abcam plc); anti-phosphorylated IκBα (1:1000; Cell Signaling Technology); anti-VEGF (1:1000; Santa Cruz Biotechnology); anti-VEGFR-1, -phosphorylated VEGFR-1 (1:1000; Abcam plc); anti-VEGFR-2 (1:500; Millipore Corporation); anti-phosphorylated VEGFR-2 (1:1000; Cell Signaling Technology); anti-Rho-associated kinase (RhoA) (1:1000; Cell Signaling Technology); anti-Akt (1:500, Cell Signaling Technology); anti-phosphorylated Akt (1:2000, Cell Signaling Technology); anti-extracellular signal-regulated kinase (ERK), -phosphorylated ERK (1:3000, Millipore Corporation)]. Then the blots were incubated with the secondary antibody (horseradish peroxidase-conjugated goat anti-mouse IgG antibody, Sigma Chemical Co., St. Louis, MO, U.S.A.). With a computer assisted video densitometer and digitalized software (Kodak Digital ScienceTM ID Image Analysis Software, Eastman Kodak Co., Rochester, NY, U.S.A.), the blots were scanned, photographed then the signal intensity (integral volume) of the appropriate bands were analyzed.
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10

Western Blot Analysis of Hypoxia Signaling

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Western blotting was performed as previously described [51 (link), 52 (link)]. Briefly, cells were collected and lysed in RAPI buffer. Cleared total cell lysate was denatured by boiling and loaded onto a 10% gradient SDS–PAGE. After electrophoretic separation, proteins were transferred to an Immobilon-P membrane. Membrane was blocked with SuperBlock Blocking Buffer, and probed with the primary antibody, anti-HIF-1α, anti-VEGF, anti-p-Akt, anti-β-actin (Santa Cruz, CA) and anti-p-ERK1/2 (Cell Signaling Technology, Vancouver, Canada), followed by incubation with a secondary antibody conjugated with horseradish peroxidase. The proteins of interest were detected by using SuperSignal West Pico Chemiluminescent Substrate kit.
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