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13 protocols using interferon gamma ifn γ

1

Cytokine-Induced Differentiation of MSCs

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The protocol for the culture and differentiation of MSC into osteogenic or adipogenic lineages were described in the Supplementary Methods. Briefly, MSC were plated onto 6 well plates at a concentration of 1 × 104 cells/cm2 and adhered for 2 days. After that the cells were washed twice with phosphate buffered saline and incubated in culture medium with or without stimulating agents for 24 h with proinflammatory cytokines interferon-gamma (IFN-γ; 500 U/mL) (R&D Systems, Minneapolis, MN) and tumour necrosis factor-alpha (TNF-α; 50, 500 and 5000 U/mL) (R&D Systems) alone or by a proinflammatory cytokine cocktail of IFN-γ (500 U/mL) and TNF-α at varied concentrations of 50, 500 and 5000 U/mL.
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2

Macrophage Polarization and Cancer Cell Lines

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Human CRC cell lines (HCT116, HT29, LoVo, and SW48), a human monocyte cell line (THP-1), and a mouse colon cancer cell line (CT26) were obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). Cells were cultured in Rosewell Park Memorial Institute (RPMI) 1640 (Gibco, Grand Island, NY, USA) supplemented with 10% fetal bovine serum (FBS, Gibco) and 1% penicillin–streptomycin (Gibco, NY,USA) in a 5% CO2 incubator at 37 °C. According to previous studies28 (link),29 (link), to polarize M0 macrophages, THP-1 cells (5 × 106) were plated in 100-phi dishes and stimulated with 320 nm phorbol 12-myristate 13-acetate (PMA; Sigma, St. Louis, MO, USA), followed by incubation at 37 °C for 24 h. The culture supernatant was collected and labeled M0 macrophage-conditioned medium (M0 CM). To polarize M1 or M2 macrophages, THP-1 cells were treated with PMA for 6 h, and M1-polarizing reagents (100 ng/ml lipopolysaccharide (LPS) plus 20 ng/ml interferon gamma (IFN-γ); R&D, Waltham, MA) or M2-polarizing reagents (20 ng/ml IL-4 plus 20 ng/ml IL-13) were added, followed by incubation at 37 °C for 18 h. The culture supernatant was collected and labeled M1 macrophage CM (M1 CM) or M2 macrophage CM (M2 CM). MG132 (proteasome inhibitor) and PI3Kγ inhibitors (TG100-115 and IPI-549) were purchased from Sigma-Aldrich (St. Louis, MO, USA) and Selleckchem (Houston, TX, USA), respectively.
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3

Macrophage Polarization and Conditioned Media

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THP-1 cells, constituting a human leukemic cell line, were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA) and grown in RPMI 1640 medium with 2 mM l-glutamate, 4.5 g/L glucose, 10 mmol/L HEPES, 1.0 mmol/L sodium pyruvate, 10% fetal bovine serum (FBS), and 1% antibiotic antimycotic mixture. Cell density was maintained between 5 × 104 and 8 × 105 viable cells/mL, and the medium was refreshed every 2–3 days. THP-1 monocytes were differentiated into macrophages through 24 h incubation with 100 nM phorbol 12-myristate 13-acetate (PMA) (Sigma, St. Louis, MO, USA). Macrophages were polarized to M1 macrophages through addition of 100 ng/mL lipopolysaccharide (LPS) (Sigma-Aldrich) and 20 ng/mL Interferon gamma (IFN-γ) (R&D Systems). Cells were then washed with PBS twice and cultured with RPMI 1640–1% FBS for 48 h. The conditioned media (CM) were harvested and filtered through a 0.22-μm filter to remove cell debris to obtain THP-1 CM, CON siRNA + M1 CM and Gal-3 siRNA + M1 CM, and stored in aliquots at −20 °C. The A7r5 cells, the rat aortic SMCs, were purchased from the ATCC and were expanded in DMEM supplemented with 2 mM glutamine and 10% FBS at 37 °C in an incubator perfused with 5% CO2 and 95% O2. Prior to experimentation, the A7r5 cells were exposed to CM for the subsequent studies.
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4

Quantifying PD-L1 Expression on Cells

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Assay ready cell lines (ATCC) were treated with 10ng interferon gamma (IFN γ) (R&D) for 48 hours. After which they were harvested and counted. 20uL of anti-PD-L1 FITC (BD Bioscience) was added for 1 hour at 4C. Cells were washed and stained with PI (Invitrogen). Data acquisition was performed on a LSR II with FACSDiva software (BD Bioscience). Data analysis was performed using FloJo software (Tree Star). Mean fluorescence intensity (MFI) was determined by gating on live cells and subtracting background (isotype) MFI.
For intracellular flow cells were treated the same as above except they were stained with Live/dead violet fixable dye (Invitrogen) for 30 min prior to addition of PDL1 for surface staining. After surface stain cells were washed and fixed in 4% paraformaldahyde for 15 minutes. Washed and treated with Perm buffer (BD Bioscience) for 30 minutes then stained with 20 uL anti-PD-L1 for another hour at 4°C. Cells were then washed and flow was ran the same as above. Intracellular protein was calculated by subtracting the MFI of fully stained samples from surface only stained samples.
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5

Cytokine Profiling of Engineered Macrophages

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CD34+ HSPC-derived macrophages expressing either 2LTRZFP or AartmChery were seeded at a density of 1 × 105 cells/well of a 24-well plate and maintained at 37 °C and 5% CO2 for 24 h. The cells were stimulated with 20 ng/mL of interferon-gamma (IFN-γ) (R&D Systems, Minneapolis, MN, USA) for 24 h in a humidified incubator at 37 °C and 5% CO2. The cell-free culture supernatant was collected and stored at −80 °C for measuring cytokine production using Bio-plex ProTM Human Cytokine Th1/Th2 panel (Bio-Rad, Hercules, CA, USA). The non-transduced CD34+ cell-derived macrophages and unstimulated cells were used as controls.
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6

Cellular Signaling Pathway Modulation

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For indicated experiments, cells were treated with recombinant human active TGF-β (R&D), PF573228 (Tocris), Y-27632 (Sigma), calcipotriol (Tocris), L-ascorbic acid (Vit. C; Fisher), basic fibroblast growth factor (bFGF; Peprotech), interleukin (IL)-1β (Peprotech), IL-3 (Peprotech), interferon gamma (IFNγ; R&D), IL-6 (Peprotech), tumor necrosis factor alpha (TNFα; Peprotech), high molecular weight hyaluronan (HMW HA; Healon), low molecular weight hyaluronan (LMW HA; ICN Biochemicals), periostin/OSF-2 (R&D), buthionine-sulfoximine (BSO; Sigma), tiron (Sigma), trichostatin A (Sigma), pleiotrophin (R&D), angiotensin II (Sigma), and platelet-derived growth factor-bb (PDGFbb; Calbiochem).
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7

Isolation and Culture of Adipose-Derived Mesenchymal Stem Cells

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Specimens of subcutaneous abdominal fat were taken from the patients by 18 G needle biopsy. Tissue processing, ASC isolation and culture were performed as described previously [18 (link)]. Five human adipose-derived mesenchymal cell lines (Lonza Group, Lonza Walkersville Inc., MD, USA) were used as a control.
All experiments were performed using ASCs at 3–5 passages. Adipose tissue-derived mesenchymal stem cells were cultured in complete culture medium composed of DMEM/F12 (PAN Biotech United Kingdom Ltd., Wimborne, UK), 10% fetal calf serum (FCS) (Biochrom, Berlin, Germany), 200 U/ml penicillin, 200 µg/ml streptomycin (Polfa Tarchomin S.A., Warsaw, Poland) and 5 µg/ml Plasmocin (InvivoGen, San Diego, CA, USA).
Both untreated and cytokine pre-stimulated ASCs were applied. For pre-stimulation, ASCs were cultured for 24 hours with human recombinant tumour necrosis factor (TNF) and interferon gamma (IFN-γ) (both from R&D Systems, Minneapolis, MN, USA; each applied at 10 ng/ml).
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8

Cytokine Secretion in BMDM Polarization

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After 6 days of culture with media containing M-CSF, BMDMs were
dissociated from the plate using cell dissociation buffer and seeded
on different stiffness PA hydrogels coated with collagen-I using HEPES
and AA buffer. The hydrogels were first placed in a 24-well culture
plate, and the cells were seeded on top of these gels at a density
of 0.1 million cells/well using 400 μL of the media. After 24
h of culture, the cells were stimulated with 0.5 ng/mL ultrapure LPS
(InvivoGen) and 1 ng/mL interferon gamma (IFNγ) (R&D Systems)
in 100 μL of the media (M1 stimulation). After 24 h of stimulation,
the cell supernatants were collected for assessment of cytokine secretion
by enzyme-linked immunosorbent assay (ELISA) following the manufacturer’s
protocol (Biolegend).
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9

Microfluidic Co-Encapsulation of Myeloma and NK Cells

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RPMI-8226 cells were labeled with 2µM Calcein AM off-chip for 30 minutes at 37°C as per manufacturer’s instructions (Live/Dead Viability/Cytotoxicity assay, Life Technologies, Carlsbad, CA). The labeled cells were washed and loaded in a syringe at an initial concentration of 1.25 million/ mL. Unlabeled CD56+ NK cells were loaded in a separate syringe at same concentration for co-encapsulation in droplets. Prior to PD-L1 blockade experiments, RPMI-8226 cells were pretreated with 500 U/mL Interferon gamma (IFN-γ, R&D Systems) for 24 hours [25 (link)] and subsequently incubated with anti-PD-L1 blocking antibody (BPS Bioscience, San Diego, CA) for 24 hours. Lenalidomide was dissolved in DMSO as per manufacturer’s instructions (Sigma Aldrich, St. Louis, MO). It was diluted in media to 2.3µM immediately prior to use [26 (link)]. The treated RPMI-8226 cells were mixed with Lenalidomide in the syringe and loaded in the microfluidic device following similar procedure as stated above.
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10

Quantifying Chemokines and Cytokines in Periarticular Tissue

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Periarticular tissue was collected and homogenized in PBS containing antiproteases [6 (link)]. Samples were processed and the supernatant was evaluated for concentrations of the chemokines CXCL1 and CXCL2 using commercially available ELISA assays, in accordance with the manufacturer’s instructions (R&D Systems, Minneapolis, MN). Culture cell supernatants (described below), were also assessed for the cytokines: interleukin IL-10, IL-17 and interferon-gamma IFN-γ using commercially available kits, according to manufacturer instructions (R&D Systems, Minneapolis, MN). Results were expressed as picograms of chemokines/cytokines (± S.E.M.) normalized for 100 mg tissue or 1 mL of culture supernatant.
Myeloperoxidase activity (a quantitative measurement of neutrophil sequestration) in periarticular tissue homogenates, standardized to the number of neutrophils obtained from the peritoneal cavity of casein-injected mice was assayed as described previously [6 (link)].
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