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9 protocols using rabbit anti col 1

1

Western Blot Analysis of Plantaris Muscle

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Plantaris muscles were lysed in RIPA buffer (Sigma) and proteins were separated through denaturating SDS-PAGE electrophoresis using Mini-Protean TGX precast gels 4-15% (Biorad) and transferred on PVDF or Nitrocellulose (0.2μm, Biorad) membrane using the Trans-Blot turbo transfer system (Biorad). Membranes were blocked with 5% skinned milk in TBS-1% Tween (TBST) 1hr at room temperature and probed overnight at 4°C with primary antibodies in TBST 5% BSA. The following antibodies were used: mouse anti-RhoA (Santa Cruz, sc-418, 1/150), rabbit anti-P-Akt (Cell Signaling, #9271S, 1/1000), rabbit anti-Col1 (Abcam, ab34710, 1/1000), rabbit anti-Fibronectin (Sigma F3648, 1/1000), rabbit anti-Erk2 (Cell Signaling, #9102, 1/1000), rabbit anti-P-Erk1/2 (Cell Signaling, #9101, 1/1000), rat anti-TenascinC (Invitrogen, MA1-26778, 1/200), and mouse anti-Gapdh (Cell Signaling, D16H11, 1/1000). Following washing in TBST, membranes were hybridized with secondary antibodies goat anti-mouse- or goat anti-rabbit-coupled to HRP (ThermoFisher, 62–6520 and A27036, 1/10,000). Proteins were revealed using SuperSignal West Femto substrate (ThermoFisher).
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2

Histological Analysis of Cardiac Fibrosis and Remodeling

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The hearts were fixed in 10% formalin and embedded in paraffin. Cardiomyocyte diameters were evaluated by periodic acid-Schiff (PAS) staining. The degree of fibrosis was determined by picrosirius red staining, and the fibrotic area was calculated as the ratio of the total interstitial fibrosis area to the total LV area of an LV section using MetaMorph software (Molecular Devices, Sunnyvale, CA, USA). Volume fractions of collagen, α-SMA, and periostin were calculated in the same manner. Optimal cutting temperature compound (Funakoshi, Tokyo, Japan)-embedded frozen heart sections and CFs were subjected to immunohistochemistry and immunocytochemistry analyses using the following antibodies: rabbit anti-Col1 (1:100; Abcam, Cambridge, UK), rabbit anti-Col3 (1:100; Abcam), mouse anti-α-SMA (1:50; Dako, Glostrup, Denmark), rabbit anti-vimentin (1:100; Abcam), and rabbit anti-periostin (1:100; Abcam). Images were obtained using confocal laser microscopy (FV1000-D IX81; Olympus, Tokyo, Japan).
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3

Immunohistochemical Analysis of Tissue Markers

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Staining for WT1 and CD68 were performed on acetone-fixed frozen sections (7μm) after endogenous biotin was blocked using a biotin blocker system (DAKO, Carpinteria, CA). To detect Type 1 Collagen (Col-1), formalin-fixed sections (5μm) were deparaffinised and antigen retrieval performed by boiling sections for 10 minutes in 10 mM sodium citrate buffer (pH 6.0). Sections were then incubated with 10% normal horse serum followed by 60 minute incubation with primary antibodies: rat anti-mouse CD68 (ABD Serotec Inc., Oxford, UK), rabbit anti-WT1 (Abcam, Cambridge, UK), rabbit anti-Col-1 (Abcam, Cambridge, UK) or concentration-matched isotype negative control. Endogenous peroxidase activity in the sections was quenched with H2O2 prior to application of biotinylated anti-rat IgG or anti-rabbit IgG (BD Biosciences, Pharmingen). A Vector stain ABC kit (Vector Laboratories Inc) was applied to the tissue followed by DAB solution (DAKO).
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4

Western Blot Analysis of Osteogenic Markers

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Total cellular proteins (20 μg from each sample) obtained above were separated by SDS-PAGE (Solarbio, Beijing, China) under reducing conditions and transferred onto a nitrocellulose membrane (Invitrogen, Shanghai, China). Membranes were blocked in 5% dry milk and probed overnight at 4 °C with gentle rocking with anti-Runx-2 (1:1000, Abcam, Cambridge, UK), rabbit anti-BMP-2 (1:1000, Abcam), rabbit anti-COL-1 (1:1000, Abcam), mouse anti-acetylated α-tubulin (1:1000, Abcam), rabbit anti-Dynlt1 (1:800, Abcam), rabbit anti-IFT88 (1:500, Santa Cruz Biotech, Dallas, Texas), or rabbit anti-GAPDH (1:800, Bioworld, Shanghai, China). After washes, membranes were incubated with a secondary antibody (HRP-conjugated goat anti-rabbit IgG or goat anti-mouse IgG, 1:10000, Bioworld). The proteins recognized by the antibody complexes were visualized by chemiluminescence (Solarbio, Beijing, China). The optical density of each maker band was measured using Image-Pro Plus 6.0 software.
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5

Atrial Fibrosis Protein Analysis

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Briefly, total protein was isolated from ground frozen atrium tissues and CFs using RIPA lysis buffer (Beyotime, China). The samples were clarified by centrifugation at 13 800 g for 15 minutes at 4°C. Protein concentrations were determined using the BCA Protein Assay Kit (Beyotime, China). A total of 20 μg of protein was separated on 10% SDS‐PAGE at 80‐100 V for 2 hours and transferred onto PVDF membranes (Millipore, USA) at 300 mA for 1.5 hours. The membranes were blocked with 5% non‐fat milk in Tris‐buffered saline with tween 20 (TBST) for 1 hour at room temperature. Each membrane was incubated with primary antibodies at 4°C overnight and then secondary antibodies at room temperature for 1 hour the next day. The following antibodies were used: rabbit anti‐TGFβRII (1:500, Santa Cruz), rabbit anti‐α‐SMA (1:1000, Abcam), rabbit anti‐Col I (1:1000, Abcam), rabbit anti‐vimentin (1:1000, Abcam), mouse anti‐Col3α1 (1:250, Santa Cruz) and mouse anti‐GAPDH (1:2000, Abcam) antibodies. All proteins were visualized using the ECL reagent Kit (Millipore Corp, USA). The values of the band intensities were quantified using Image J software.
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6

ECM Coating Characterization Protocol

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Col I coatings were prepared in 0.1% acetic acid at a concentration of 35.5 μg/mL. FN was diluted to 75 μg/mL in deionized (DI) water. Laminins 111, 411, and 511 were diluted in DPBS with calcium and magnesium to concentrations of 15.8, 0.8, and 0.8 μg/mL. All solutions were kept on ice during preparation. A solution volume of 200 μL was added to each well of a 96-well plate, which was then incubated at 4°C for 24 h. The wells were then washed twice with PBS and cells seeded immediately to prevent drying of the coatings. ECM coating was confirmed via immunostaining. Primary antibodies were mouse anti-FN, Millipore Sigma, Cat. No. 32160702; rabbit anti-laminin β1, abcam, Cat. No. 109293; and rabbit anti-Col I, abcam, Cat. No. 138492. Secondary antibodies were goat anti-rabbit Alexa Fluor 647, Invitrogen, Cat. No. A21244, and goat anti-mouse Alexa Fluor 647, Invitrogen, Cat. No. A32728 (Figure S6).
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7

Protein Expression Analysis Protocol

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Cells or tissues were homogenized in cold RIPA buffer containing protease and phosphatase inhibitors. The lysates were collected following centrifugation and protein concentration was determined using a BCA protein concentration determination kit (Beyotime; Cat# P0011). The supernatant was stored at −80 °C transferred to a polyvinylidene difluuntil use. The proteins were separated by electrophoresis and oride membrane (Millipore, Billerica, MA, USA). The membranes were blocked with fat-free dry milk and then incubated with indicted primary antibodies as follows: rabbit anti-Col I (Abcam; Cat# ab138492, 1:1000), rabbit anti-Col III (Abcam; Cat# ab184993, 1:1000), rabbit anti-SMA (Cell Signaling; Cat# 19245, 1:2000), rabbit anti-ALKBH5 (Proteintech; Cat# 16837-1-AP, 1:1000), rabbit anti-IL11RA1 (Abcam; Cat# ab125015, 1:1000), rabbit anti-IL11 (Proteintech; Cat# 55169-1-AP, 1:1000) and rabbit anti-GAPDH (Proteintech; Cat# 10494-1-AP, 1:5000). The immuno-positive bands were visualized by enhanced chemiluminescence reagent (Millipore, USA) following incubation with a secondary peroxidase-conjugated anti-rabbit (Beyotime; Cat# A0208, 1:10000) or anti-mouse (Beyotime; Cat# A0216, 1:10000) antibody. Image J (Vl.8.0) analysis was used to quantify the bands of western blot images and GDPDH was used as an internal reference.
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8

Evaluating Fibrotic Markers in pHLF Cells

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pHLF cells were seeded (1 × 104 cells/ml) into 24-well plates containing rounded glass cover slips. TGF-β1 (2 ng/mL) was added to each well, followed by the addition of medium containing TH5487, dexamethasone, nintedanib, medium only, or vehicle only. Following 24 h of treatment, cells were washed and fixed with ice-cold methanol, and then treated with 0.5% Triton X-100. Cells were blocked using Dako Protein Block (Agilent, CA, USA) for 1 h at room temperature and then primary antibodies, rabbit anti-COL I, rabbit anti-αSMA, rabbit anti-fibronectin, and rabbit anti-vimentin antibodies (Abcam, Cambridge, UK) were added for overnight. AlexaFluor 488-conjugated goat anti-rabbit secondary antibody (Invitrogen) was used. Glass cover slips were mounted onto glass slides, with nuclei counter-stained using DAPI-containing fluoroshield (Abcam). Images were visualized using a Nikon Confocal Microscope. Fluorescence was quantified using ImageJ software (Java 1.8.0_172).
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9

Western Blot Analysis of Liver Proteins

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Total proteins from cells or liver tissues were lysed in RIPA buffer, and protein concentration was determined by BCA assay. Proteins were separated by SDS-PAGE and then transferred to a PVDF membrane (Millipore, MA, USA) at 80 V for 2 h.
Membranes were blocked in 5% non-fat milk for 1 h and then incubated with primary antibodies for 16 h with diluted mouse anti-GAPDH (1:5,000; ptm-biolab, Hangzhou, China), rabbit anti-α-SMA (1:1,000, proteintech, Wuhan, China), rabbit anti-COL I (1:1,000, Abcam, USA), mouse anti- SMAD2 (1:1,000, ptm-biolab, Hangzhou, China), SMAD3 mouse monoclonal (1:1,000, proteintech, Wuhan, China). The membranes were incubated with the horseradish peroxidase-conjugated species-specific secondary antibody for 2 h and visualized using chemiluminescence reagent (Millipore, MA, USA).
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