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5 protocols using n methylmaleimide

1

Probing the Unfolded Protein Response

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Antibodies against XBP-1s (Cell
Signaling Technology), IRE-1 (Cell Signaling Technology), ATF6 (Proteintech),
PERK (Cell Signaling Technology), p-eIF2α (Cell Signaling Technology),
eIF2α (Cell Signaling Technology), ATF4 (Cell Signaling Technology),
cleaved PARP (Cell Signaling Technology), and p97 (Fitzgerald) were
obtained commercially. Cysteine, methionine, glycine, GSH, and N-methylmaleimide (NMM) were procured from Sigma-Aldrich.
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2

Western Blot Protein Detection Protocol

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Cells were homogenized by scraping into 90 µl Urea/SDS buffer (10 mM Tris‐HCl pH 6.8, 6.7 M urea, 1% w/v SDS, 10% v/v glycerol and 7.4 µM bromophenol blue, containing 50 µM phenylmethysulfonyl fluoride and 50 µM N‐methylmaleimide, all Sigma Aldrich). Lysates were sonicated and 10% v/v β‐mercaptoethanol (Sigma Aldrich) added. Proteins were separated by SDS‐PAGE using 10% polyacrylamide gels; 1.5 M Tris, 0.4% w/v SDS, 10% acrylamide/bis‐acrylamide (all Sigma Aldrich), electrophoresis buffer; 25 mM tris‐HCl, 190 mM glycine, 0.1% w/v SDS, pH 8.5 (all Sigma Aldrich). Proteins were transferred to a nitrocellulose membrane using the TurboBlot system (BioRad) and blocked at room temperature in Odyssey® TBS‐Blocking Buffer (Li‐Cor BioSciences) for 1 h. The membranes were probed overnight at 4°C diluted in blocking buffer, washed 3 × 5 min in PBS with 0.1% Tween (both Sigma Aldrich) and probed for 1 h at room temperature in the dark with IRDye® conjugated secondary Abs against goat IgG (800 CW) and rabbit IgG (680 CW), raised in goat or donkey (LiCor BioSciences), diluted in Odyssey® TBS‐Blocking Buffer at 0.05 µg/ml. Membranes were then washed for 3 × 5 min in PBS with 0.1% Tween, rinsed with ddH2O and imaged using the Odyssey® CLX 9120 infrared imaging system (LiCor BioSciences). Image Studio Light v.5.2 was used to process scanned membranes.
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3

Pharmacological Modulation of Ion Channels

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For inhibition of TRPA1, we incubated cells with the antagonist HC-03003113 (link) (40μM in DMSO; Cayman Chemicals #11923) for 45 min before stimulation. For activation of TRPA1, we used NMM13 (link) (N-Methylmaleimide; 100μM in DMSO Sigma-Aldrich #389412) or AITC28 (link) (30μM in DMSO, allyl isothiocyanate; Sigma-Aldrich # 377430). For activation of Piezo1, we used yoda-175 (10 μM in DMSO; Tocris #5586). For activation of TRPV1 we used capsaicin76 (link) (3 μM in DMSO; Sigma-Aldrich #M2028). The final concentration of DMSO in the external solution was 0.1% or lower for all groups, which was also used as vehicle control. For cytoskeleton experiments, nocodazole (5μM; Tocris, #1228), jasplakinolide (200 μM; ThermoFisher # J7473), paclitaxel (600 nM; Sigma-Aldrich # T7191), cytochalasin D (5μM; Cayman Chemicals, #11330) or latrunculin A (1 μM; Cayman Chemicals, # 10630) in 0.1% DMSO were added to the culture media 45 min prior to imaging37 (link). For pharmacology in primary neurons, we used TRPV1 antagonist, A78416877 (link) (20μM; Tocris, #4319, 45 min incubation) in 0.1% DMSO, BAPTA78 (link) (30μM; Invitrogen, #B1204, 45 min incubation) directly dissolved in culture media and TTX79 (link) (18μM; tetrodotoxin citrate; Tocris #1069, 5 min incubation, where we also inhibit TTX-R channels).
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4

Comprehensive Antibody and Reagent Protocol

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The following antibodies were used in this study: anti-c-Myc (Santa Cruz), anti-Flag (M2, Sigma), anti-Xpress (Invitrogen), anti-V5 (Invitrogen), anti-caspase-1 (Santa Cruz), anti-Cyld (Cell Signaling), anti-β-actin (Sigma), anti-NLRP6 (Sigma), anti-HA (Santa Cruz), anti-His (GE Healthcare), anti-GST (Santa Cruz), anti-IL-18 (Santa Cruz), anti-ASC (Santa Cruz), human anti-NLRP6 (NSJ Bioreagents), InVivoMAb anti-mouse IL-18 (BioXcell), normal rabbit IgG (Santa Cruz) and normal mouse IgG (Santa Cruz). The following reagents were used: mouse rIL-18 (MBL International), picrylsulfonic acid solution (TNBS; Sigma), disuccinimidyl suberate (Thermo Scientific), N-methylmaleimide (Sigma), Pan TUBEs (Life Sensors), K63 TUBEs (Life Sensors), M1 TUBEs (Life Sensors), UbiCREST enzyme kit (Boston Biochem), Flag-tagged agarose beads (Sigma), glutathione beads (GE Healthcare Life Sciences).
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5

Enzymatic Reduction with BNAH Cofactor

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Maleimide, N-methylMaleimide, N-ethylMaleimide, 2-methyl-N-phenylMaleimide, 2-cyclohexenone, 1-cyclohexene-1-carboxaldehyde, 1-acetyl-1-cyclohexenone, ketoisophorone, glucose-6-phosphate dehydrogenase and pyridine nucleotide cofactors were purchased from Sigma–Aldrich (Steinheim, Germany) and Carl Roth (Karlsruhe, Germany). 1-Benzyl-1,4-dihydronicotinamide (BNAH) was synthesized as previously described (Paul et al., 2013 (link)). Other (bio)-chemicals were obtained from commercial sources and of the purest grade available.
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