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Bcip nbt kit

Manufactured by Thermo Fisher Scientific
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The BCIP/NBT kit is a colorimetric detection system for the visualization of protein or nucleic acid targets in various applications, such as Western blotting, immunohistochemistry, and in situ hybridization. The kit contains 5-bromo-4-chloro-3-indolyl phosphate (BCIP) and nitro blue tetrazolium (NBT) as the chromogenic substrates, which produce a purple-blue precipitate upon enzymatic cleavage, indicating the presence of the target analyte.

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23 protocols using bcip nbt kit

1

Characterization of Endothelial and Mesenchymal Stem Cells

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Confluent EPCs (passage 2–4) were washed with DPBS, fixed with 4% paraformaldehyde (Sigma, USA), then incubated with Ulex Europaeus agglutinin 1(UEA-1, Vector Laboratories, USA) in the dark at 37°C for 20 min. Cells were washed twice with DPBS, fixed with 4% paraformaldehyde for 30 min, DAPI staining (Sigma, USA) was used to mark nuclei. Samples were observed under fluorescence microscopy.
Confluent EPCs (passage 2–4) were incubated with Alexa Flour 488 acetylated low-density lipoprotein (DiI-ac-LDL; Molecular Probes/Life Technologies) at 37°C for 4 h. Cells were washed twice with DPBS and fixed with 4% paraformaldehyde for 30 min; DAPI staining was used to mark nuclei. Samples were observed under fluorescence microscopy.
MSCs were induced to differentiate into adipose cells or osteocytes as previously described [15 (link)]. Briefly, the MSCs were induced in adipogenic differentiation medium or osteogenic differentiation medium for 14 days. Induced adipose cells were detected by oil red O staining (Sigma, USA) at 0, 7 and 14 days. Induced osteocytes were detected at 0, 7 and 14 days using a BCIP/NBT kit (Invitrogen, USA) to test for the expression of alkaline phosphatase.
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2

Western Blot Analysis of mTOR/AKT Pathway

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The cells were lysed in RIPA buffer containing a phosphatase and protease inhibitor cocktail (EMD Millipore, Temecula, CA, USA). Thirty micrograms of protein was separated by 10% SDS-PAGE, transferred to polyvinylidene fluoride (PVDF) membranes (Millipore Corp., MA, USA), and incubated with rabbit anti-phospho-mTOR (1:1000), anti-mTOR (1:1000), anti-phospho-AKT (1:1000), anti-AKT (1:1000), anti-PI3K (1:1000), or anti-β-actin (1:1000) antibodies overnight at 4 °C. The membranes were then incubated with alkaline phosphatase-conjugated anti-rabbit IgG antibodies (1:2000; Cell Signaling Technology, Danvers, MA, USA) for 1 h and visualized using a BCIP/NBT kit (Invitrogen, Carlsbad, CA, USA).
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3

Quantitative Protein Analysis in PSCs

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For protein level analysis, proteins were isolated from PSC samples as described [17 (link)] and protein concentration was measured using the BCA protein assay. The proteins were separated through 12% SDS-PAGE and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore Corp., MA, USA). After blocking, the membranes were incubated with mouse anti-rEgTPx serum (1:1000) or rabbit anti-β-actin serum (Santa Cruz Biotechnology, CA, USA. 1:2000) overnight at 4 °C followed by incubation with AP-conjugated second antibody (Cell Signaling Technology, Danvers, MA, USA). Protein bands were visualised with a BCIP/NBT kit (Invitrogen, Carlsbad, CA, USA). The expression levels of the respective proteins were quantified using Quantity One software (Bio-Rad) after scanning of the membranes.
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4

Histone Modifications in Wheat Root Nuclei

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The nuclei of wheat root tip cells treated with PEG 8000 were isolated as described by Zhu et al. (2008) . A 20 μg aliquot of nuclear proteins was separated by SDS–PAGE and blotted onto a polyvinylidene difluoride (PVDF) membrane (Millipore, GVPPEAC12). Anti-tetra-acetylated histone H4 (1:1000), anti-histone H4 (1:100 000), anti-histone H3K4me2, anti-histone H3K27me3, anti-histone H3K9ac, anti-histone H3K9me2, and anti-histone H3 (Upstate Biotechnology) primary antibodies were used to detect acetylated and methylated histone H4 and histone H3; the bands were visualized using the BCIP/NBT Kit (Invitrogen). Data shown are representative of three independent experiments.
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5

Intestinal Epithelium Characterization

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Fixed ileum segments were embedded in paraffin and sectioned at 5 µm. Enterocytes, absorptive cells of the intestinal epithelium, were detected by staining for alkaline phosphatase. Sections were dewaxed and incubated in NTMT buffer (pH 9.5) for 10 min, followed by staining using a BCIP/NBT kit (5-Bromo-4-Chloro-Indolyl-Phosphatase/Nitroblue Tetrazolium salt, Invitrogen; Paisley, UK) for 15 min at room temperature. Nuclear fast red was used as a counterstain. Goblet (mucous-secreting) cells were detected using periodic acid Schiff (PAS) stain, and hematoxylin and eosin staining was also performed to assess intestinal morphology.
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6

Protein Analysis by Western Blotting

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Proteins were isolated and protein concentration was measured using BCA protein assay. The proteins were subjected to SDS-PAGE electrophoresis and transferred to polyvinylidene fluoride membrane (Millipore Corp, Massachusetts, USA). After blocking, membranes were incubated with primary antibodies (β-actin, Type I Collagen, Type III Collagen, Smad2/3 and TβRII, Santa Cruz Biotechnology, Dallas, Texas, USA; p-Smad2/3, Cell Signaling Technology, Danvers, USA) overnight at 4 °C followed by incubation with AP-conjugated secondary antibodies (Cell Signaling Technology, Danvers, USA). The proteins were visualised with BCIP/NBT kit (Invitrogen, Carlsbad, CA, USA).
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7

Histone H4 Acetylation Analysis

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Nuclei were isolated as described by [14 (link)]. Twenty micrograms of nuclear protein and 1 μg of purified core histones from chicken (Upstate Biotechnology, 13–107) were separated by SDS/PAGE and blotted onto a PVDF membrane (Millipore, GVPPEAC12). Anti-tetra-acetylated-histone H4 (1:1,000) or anti-histone H4 (1:100,000) (Upstate Biotechnology) primary antibodies were used to detect acetylated and unacetylated histone H4, bands were visualized by using the BCIP/NBT Kit (Invitrogen). Data shown are representative of six independent experiments.
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8

Comprehensive Protein Analysis Workflow

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Cell lysis, protein isolation and Western blots were carried out as specified in other studies [7 (link),8 (link),16 (link)]. The following primary antibodies were used: Anti-β-actin (1:5000 dilution) (Sigma-Aldrich, St. Louis, MO, USA), anti-MAPK14 in (1:1000 dilution) (Cell Signaling, Danvers, MA, USA), anti-ATF2 in (1:1000 dilution) (Cell Signaling, Danvers, MA, USA). β-actin served as a reference for normalization. Immunoreactions were visualized applying the BCIP/NBT kit (Invitrogen by Thermo Fisher Scientific, Waltham, MA, USA). Densitometric analysis of scanned Western blot images was performed using “ImageJ” (National Institutes of Health, Bethesda, MD, USA).
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9

Western Blot Analysis of Chikungunya Virus Antibodies

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Approximately 1 μg of recombinant E2* protein was submitted to a 12% SDS-PAGE under reducing conditions and transferred to nitrocellulose membranes (Hybond-C extra nitrocellulose- GE Healthcare, Chicago, USA). The nitrocellulose membranes were blocked with PBS 0.05% Tween 20 (PBST), fat-free milk (5% w/v) and BSA (2.5% w/v) overnight at 4 °C. The membranes were washed 3 times with PBST and incubated with immunized mice (1:500), or human (from a convalescent CHIKV patient or a non-infected individual) (1:500) sera for 2 h at room temperature. After washing with PBST, the membranes were incubated with horseradish peroxidase-labeled goat anti-mouse IgG (1:2000, KPL) or phosphatase goat anti-human IgG (1:2000, KPL) for 2 h at room temperature. After 3 washes, the reaction was developed with chemiluminescence (ECL, GE Healthcare, Chicago, USA) or BCIP/NBT kit (Invitrogen) and analyzed with Alliance 4.7 software (Uvitec, Cambridge, UK).
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10

Western Blot Protocol for Protein Analysis

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Cell lysis, protein isolation and Western blots were carried out as specified elsewhere [70 (link),74 (link),75 (link)]. The following primary antibodies were used: Anti-β-actin (1:5,000 dilution) (Sigma-Aldrich, St. Louis, USA), anti-ZCCHC11 (1:1,000 dilution) (Proteintech, Rosemont, USA), anti-LIN28A (1:1,000 dilution) (AG Meister, Laboratory for Biochemistry, University of Regensburg, Germany [28 (link),29 (link)]. β-Actin served as a reference for normalization. Immunoreactions were visualized applying the BCIP/NBT kit (Invitrogen by Thermo Fisher Scientific, Waltham, MA, USA). Densitometric analysis of scanned Western blot images was performed using "ImageJ" (National Institutes of Health, Bethesda, MD, USA).
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